FMO01452.5prime Sequence
865 bp (865 high quality bases) assembled on 2008-03-18
> FMO01452.5prime
CAGTCGACATGCTGCGCTCAAATTTCTTAAGATTGATGGCCCACGGGGCT
CCAAGTAGATTAATGTCCACCGCCACCAAGCTGACCACAGTGGAGATCAA
CGATAAGACAGGAATCGCTACTCTCACGATGAACCGGCCTCCGGTGAATA
GCCAAAATGTCCAGCTGCTTTTGGACCTGCAGACTTCCATTAGCGAAATT
GAGAACAATAAAAGTCGGGGTCTCATTTTAACCTCTGCCAGCTCCAATGT
GTTCTCAGCTGGCCTGGACATCTTTGAAATGTATAACACAGACGTGGAGC
GACTCCGAACCGTTTGGACCGAATTGCAGAATGTATGGATTGCCCTCTAT
GGAACAACTTTGCCCACGGCAGCAGCCATCAATGGCCACGCCCCCGCTGG
CGGTTGCCTGCTGGCCACTGCCTGTGAGTATCGAGTGATGCGGCCCAACT
TTTTGATTGGATTAAACGAAGCCCAACTAGGAATCATTGCACCCAAGTGG
CTAATGTCCGGCTTCGCTAGCATACTGCCCAAACGGGTGGCAGAGCGAGC
TCTCACCCAAGGACGTATGTTCACCACACAGGAGGCCTTTGAAGTTGGCC
TGATCGATGAGATCGCCAGCAGCAAGGAAGAGGCCTTGGAGAAGTGCGCT
GCCTTCATCGGCACCTTTGCTAAGGTCAATCCTTTGGCCCGCGGACTGAC
CAAGCTCCAGTTCCGTGGCGACAACATTAAGGAGTTTGAGATGATTCGCG
AGAAAGATATTGCTGACTTTGTAGCTCTAGCTTCTAGCCCGGGAGTGCAG
AAGGTTATGGGAGCTTATCTTGAAAACCTAAAGAACAAGGTCAAGAAGCA
AGCTTTCTAGACCAT
FMO01452.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4594-RB | 1103 | CG4594-RB | 123..961 | 9..847 | 4195 | 100 | Plus |
| CG4594-RA | 1099 | CG4594-RA | 119..957 | 9..847 | 4195 | 100 | Plus |
| CG4598-RB | 1216 | CG4598-RB | 151..803 | 63..715 | 595 | 73.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:58:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 9920854..9921317 | 384..847 | 2320 | 100 | Plus |
| 2L | 23513712 | 2L | 9920374..9920602 | 9..237 | 1145 | 100 | Plus |
| 2L | 23513712 | 2L | 9920654..9920801 | 237..384 | 740 | 100 | Plus |
| 2L | 23513712 | 2L | 9918935..9919101 | 63..229 | 325 | 79.6 | Plus |
| 2L | 23513712 | 2L | 9919379..9919707 | 387..715 | 265 | 72 | Plus |
Blast to na_te.dros performed on 2014-11-28 18:58:59 has no hits.
FMO01452.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:20 Download gff for
FMO01452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4594-RA | 18..862 | 2..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:15 Download gff for
FMO01452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4594-RA | 113..957 | 2..847 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:46 Download gff for
FMO01452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4594-RA | 113..957 | 2..847 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:46 Download gff for
FMO01452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 9920368..9920601 | 2..236 | 98 | -> | Plus |
| 2L | 9920654..9920800 | 237..383 | 100 | -> | Plus |
| 2L | 9920854..9921317 | 384..847 | 100 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:15 Download gff for
FMO01452.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 9920368..9920601 | 2..236 | 98 | -> | Plus |
| arm_2L | 9920654..9920800 | 237..383 | 100 | -> | Plus |
| arm_2L | 9920854..9921317 | 384..847 | 100 | | Plus |
