FMO01454.5prime Sequence
716 bp (716 high quality bases) assembled on 2008-03-18
> FMO01454.5prime
CAGTCGACATGCAGCGATTCCAAGTGTGCAGCGTCCTGATCCTGGCCTGG
ATTGCCTGTGGACATGCCCTGGCCGTGGGATCCCCGGAGTGCCCCGAGAA
GTACGGCGTGCAGGCGTACGCCCACACGGAGAACTGCGACCAGTTCTTCC
TCTGCACCAACGGCACCCTGACCCTGGAGACCTGCGAGAACGGACTGCTC
TTCGATGGCAAGGGCGCGGTGCACAACCACTGCAACTACAACTGGGCGGT
GGACTGCAAGGGCCGCCAGTGGGATCCCACTCCCATTTCCACGCCGGCCT
GCGAGTACCAGTTCGGTCTGTACGCTGTCTCCAAGGACTGCTCCACCACC
TACATCAAGTGCGCCCACGGTGAGCCGCACGAGCAGGACTGCGACGCCGG
GTTGGCCTACGACGAAAGGATCCATGGCTGCAACTGGCCGGATCAGCTGC
TGGAGCACTGCAATCCCGAGGCGGTCGTTGGCTTCAAGTGCCCCACCAAG
GTGGACCCCAACTCGGTGGCCGCTCGCTTCTGGACCATCCCCCGGTTCCC
CGTCGCCGGCGACTGCCACCGCCTGATCACTTGCGTGGAGGGCCATCCGC
GCCTGATCAGCTGCGGCGAGGACAAGGTCTTCGACGAGCACACGCTGACC
TGCGAGGACCCGGAGTACGCCAGCGGCAGCTGTGCCAACTACGGCAAGGC
AAGCTTTCTAGACCAT
FMO01454.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Peritrophin-A-RB | 1348 | CG17058-RB | 235..926 | 7..698 | 3430 | 99.7 | Plus |
| Peritrophin-A-RA | 1238 | CG17058-RA | 125..816 | 7..698 | 3430 | 99.7 | Plus |
| Peritrophin-A-RC | 1406 | CG17058-RC | 125..589 | 7..471 | 2325 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 20247548..20247775 | 471..698 | 1110 | 99.1 | Plus |
| X | 23542271 | X | 20246904..20247120 | 60..276 | 1085 | 100 | Plus |
| X | 23542271 | X | 20247192..20247386 | 277..471 | 975 | 100 | Plus |
| X | 23542271 | X | 20244881..20244935 | 7..61 | 275 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:53:23 has no hits.
FMO01454.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:23 Download gff for
FMO01454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG17058-RB | 223..920 | 1..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:40 Download gff for
FMO01454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Peritrophin-A-RA | 119..816 | 1..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:56 Download gff for
FMO01454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Peritrophin-A-RA | 119..816 | 1..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:56 Download gff for
FMO01454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 20244875..20244934 | 1..60 | 93 | -> | Plus |
| X | 20246905..20247120 | 61..276 | 100 | -> | Plus |
| X | 20247192..20247386 | 277..471 | 100 | -> | Plus |
| X | 20247549..20247775 | 472..698 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:40 Download gff for
FMO01454.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 20115949..20116008 | 1..60 | 93 | -> | Plus |
| arm_X | 20117979..20118194 | 61..276 | 100 | -> | Plus |
| arm_X | 20118266..20118460 | 277..471 | 100 | -> | Plus |
| arm_X | 20118623..20118849 | 472..698 | 99 | | Plus |
