FMO01459.5prime Sequence
404 bp (404 high quality bases) assembled on 2008-03-18
> FMO01459.5prime
CAGTCGACATGGTGGTCACACACAACGTCAAGGGATACGATGAGTTCACC
AAAAAGATGGAGGAACTGGAGAACGGCGACGAGCCGGTCCACGTCCTCTT
CAGTGGCGGCAAGGACGAGAAAGGAGAGAGCTGGTGCCCCTACTGCGTCA
AGGCGGAGCCGGTGATACACGATGCGCTGAAGAAGGCCCCGGGCAACTCG
CACTTCGTGCATGTGGATGTGGGCGAGCGGGCATACTGGAAGGATTTGAA
CTGCCCCTTCCGCAAGGATCCCAACACGCATCTGATCTTCTTGCCCACTC
TGTTGCGCTGGAAGCGGCCACAGCGTCTGGATGGCGAGCGCTGCTCCAAT
CAGGATCTCGTCGAGATGATGTTCGAGGATGAGGATGCAAGCTTTCTAGA
CCAT
FMO01459.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cl-RC | 674 | CG11024-RC | 200..578 | 8..386 | 1895 | 100 | Plus |
| cl-RB | 689 | CG11024-RB | 215..593 | 8..386 | 1895 | 100 | Plus |
| cl-RA | 615 | CG11024-RA | 141..519 | 8..386 | 1895 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5521136..5521286 | 236..386 | 755 | 100 | Plus |
| 2L | 23513712 | 2L | 5520400..5520545 | 8..153 | 730 | 100 | Plus |
| 2L | 23513712 | 2L | 5520618..5520700 | 153..235 | 415 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:24:26 has no hits.
FMO01459.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:10 Download gff for
FMO01459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11024-RA | 134..525 | 1..391 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:02 Download gff for
FMO01459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cl-RA | 132..523 | 1..391 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:37 Download gff for
FMO01459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cl-RA | 132..523 | 1..391 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:37 Download gff for
FMO01459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5520391..5520545 | 1..153 | 97 | -> | Plus |
| 2L | 5520619..5520700 | 154..235 | 100 | -> | Plus |
| 2L | 5521136..5521290 | 236..391 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:02 Download gff for
FMO01459.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5521136..5521290 | 236..391 | 98 | | Plus |
| arm_2L | 5520391..5520545 | 1..153 | 97 | -> | Plus |
| arm_2L | 5520619..5520700 | 154..235 | 100 | -> | Plus |
