FMO01460.5prime Sequence
1071 bp (1043 high quality bases) assembled on 2008-03-18
> FMO01460.5prime
CAGTCGACATGAATGGATCGCGTAAAATAAAGTCCATGAAGACGATTCGC
CTTGGCGACGTTCTATACGACGACCAAAAACGACTTCTAACGCTGTGCCG
CAGCTGCGAATGCCACTTTATGACGCTCCAATCGTTCCAACGCCACCTAG
CCGATTGCCCCGGAGTAAAATACATAGTAACGCCGATCGAACCGCTGGCA
TTTGATGATGCCAATCGGGAAACGAGACTGGTGAATGGCAGACAGGAGAT
TCACATCTACGACCTGGAGGCGGTTAAGAAGAACACCAACACGGCCATCG
ATTGGGAGGCAGAGCTGGAGGATCCACGCTGGTACACCAATCCCAAGCCC
ACCGTGCAGACCATACCAAAGACAAATTCCAAGGAAAATATAGTAAAGGA
GGATGTAGTGCCGCTCGCCAAGGAGCCTCAGGAACCGGAAGGGGTGCCTG
CGAAACGTCCGCGTAGCCCTCCCACCACCCGACGTACCATTCTGACCTCC
CAGCAGCAGCGCAGATCCCGTGCCTGCTTGACTTCCCCTCAACCGCCAGC
AGTAAAGATGAAAAAGGCCATCATTCTGGTGCCCACTGTGCTGGAAGATC
TGAAGCGATTGCAGGACACGGAGAAAAAGGAAAGGATTCCAGAGGCACCA
CCAGCTCCTGTACATCCTGTAAGGTCATTGCAATCTCGTGCTACCGGGAC
AACGCAGTCAACATCTCAATTGGTACCCATGAAATTTTCTCCTGCATCGA
AGCTTATTATACCAGTCTCTTCAAGGATATCTGAAGTACCAGAACCCTCC
CAAGACGCCCGAGAAACCAGTTCCTACCATAACAAGCAAATCAACTCCTC
CATTGGATGGCACCCAGAAAATCCTAAACAAACTCAGAGCATGCGGTGTG
AGGTGAAGCGAGCAAGTACTCAATTGATGCCACGACTGAGCTAAATCCAA
CAAAATCAGAGACCTTGGACATCATGAGAAACTGCATTCAGGGCATCAGA
TGCACCAAAGTAGAAAATCGGCAGCTTTCTAGACATCGTTTGGCGGCGGG
CCCAGGTAGTGGTCATATCAT
FMO01460.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:40:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10265-RA | 1230 | CG10265-RA | 85..1104 | 9..1020 | 4845 | 98.8 | Plus |
| CG10265-RC | 1368 | CG10265-RC | 85..799 | 9..723 | 3575 | 100 | Plus |
| CG10265-RC | 1368 | CG10265-RC | 798..1051 | 775..1020 | 1015 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:40:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 14992658..14993430 | 1012..247 | 3460 | 98.6 | Minus |
| 2R | 25286936 | 2R | 14993512..14993751 | 248..9 | 1200 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 21:40:16
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| G6 | 2042 | G6 G6_DM 2042bp | 622..674 | 799..848 | 114 | 71.7 | Plus |
FMO01460.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:12 Download gff for
FMO01460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10265-RB | 744..1768 | 9..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:41:04 Download gff for
FMO01460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10265-RA | 85..1109 | 9..1027 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:30 Download gff for
FMO01460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10265-RA | 85..1109 | 9..1027 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:30 Download gff for
FMO01460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 14992644..14993428 | 249..1027 | 98 | <- | Minus |
| 2R | 14993512..14993751 | 9..248 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:41:04 Download gff for
FMO01460.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 10881017..10881256 | 9..248 | 100 | | Minus |
| arm_2R | 10880149..10880933 | 249..1027 | 98 | <- | Minus |
