FMO01461.5prime Sequence
704 bp (704 high quality bases) assembled on 2008-03-18
> FMO01461.5prime
CAGTCGACATGCTGCGCAAAACGGCAACGATGGGAATCATGGCGGCGGTT
GCCGTTAAAGCGGCTCCCGAGCCCCAGAAACCAGCCTCCAGTGCGGCGGA
CTGCAGCCTGGTGTGCCGGCCCAGCGAGCTGCCCATCTACGGCAGCTTGC
GCAAGACAGAACCCAAGCCAGAACGGCATCCACCACAAGACTCTGTGCTG
CACAAGAACCTGGAGGCCGGAGTCCGCTATGTGCGCGAGGAGGTGCAGTC
TGGATATAAGGCAGTGGCCGATCAAGCCGGCATTGTCGGCCATTACGTGG
AAACCGCTAAGGCACACACCCAGTCCACCATCGACATGCTGAACGAGCCC
CAGAACTCCCTGCACCGCAGCGGAGCCATTGTGGTGGGCGGTCTGGCTGG
TTTCATCTTCGCCGCCCGTGGAGGCTTCATAAAGAAGGTGTTGTATTCGG
GCATCGGAGCAGGTGCAGTCGCCTCCATGTGCTACCCCCGCCAGGCGGAA
GAAAACTGCCGCGTGGTACTCTACGAGGGCCGTAAGATCTTCGCCGTGGC
CTACAACTTCATCAAGGGCGTAAAGCCAGGAGAGGATGTTCCCGTAGTGC
CCTTCCCTACCTCGCTGGAGGACCTTAAGTACATGGCCAGTGACCTGTAC
GATGAGGCAAAGGATCTAATCTTCCCCAAAAAGAAGGCAAGCTTTCTAGA
CCAT
FMO01461.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:14
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5903-RC | 2392 | CG5903-RC | 277..959 | 4..686 | 3400 | 99.9 | Plus |
| CG5903-RB | 995 | CG5903-RB | 164..846 | 4..686 | 3400 | 99.9 | Plus |
| CG5903-RA | 1487 | CG5903-RA | 277..959 | 4..686 | 3400 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:29:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 16145834..16146359 | 686..161 | 2630 | 100 | Minus |
| 3R | 32079331 | 3R | 16146423..16146579 | 160..4 | 770 | 99.4 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:29:13 has no hits.
FMO01461.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:34 Download gff for
FMO01461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5903-RA | 273..959 | 1..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:31 Download gff for
FMO01461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5903-RA | 273..959 | 1..686 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:47 Download gff for
FMO01461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5903-RA | 273..959 | 1..686 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:47 Download gff for
FMO01461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 16145834..16146359 | 161..686 | 100 | <- | Minus |
| 3R | 16146423..16146581 | 1..160 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:31 Download gff for
FMO01461.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 11971556..11972081 | 161..686 | 100 | <- | Minus |
| arm_3R | 11972145..11972303 | 1..160 | 98 | | Minus |
