FMO01466.5prime Sequence
765 bp (765 high quality bases) assembled on 2008-03-18
> FMO01466.5prime
CAGTCGACATGAATGATTCATTTGGAGATTTCAATGCCACACAAACTGCG
CCAACTGGAGCCGCCAGCAATCAAAAGGGAGAAGGAATAGTGCCCCTGGT
GGTGAAGCAGATTGTGGACGCCCCAGAGGGAAACATCGAGTTGTTCGGCA
TGCAGTACGCCATGGCATGTGTTGTGGCCATAGTGCGGAACGTGGAGACT
TCCTCGACGAAGATCACCTACACCCTGGAGGATCATAGCGGCAGGATCGA
TGCGCACTACTGGCTTGAGGAGGGCGACGCTCTCAAGGCACCCGAAGTAA
TGGTCAACAACTACGTGAAGGTCTACGGCACCACCCGGTCGCAAGGCGGT
TCCAAAACCCTAATGATCTTCAAGCTACTGCCCGTTTTGGATCCCAACGA
GGTGTGCACCCACCTGCTGGAAGTACTCAATGCCCGCTACAGGGCCGAGG
ACTACCAGAGCAAGGGTGGAGCTGGAGCTGGTGCAGGGGCTTCTTCCGGC
TCAGGCTCCATAGCTGATTTCACCGCCTCCCAGAGCTCGGCCATTGTCAG
TGGGCTGGAGCCCAAGCAGCAGGCCGTATTCCAGGCCATCAAGAGCAATG
TTTCCGAGGAGGGCATCTCCCGCAAGGAACTGAAAGCCAAATTCTCCCAC
ATCAGCGACTCTGAGTTGACCAACATTCTGGACTTTATGATTTCCGAGGG
ACACATTTATTCCAGCATTGACGCAGATCACTTTATTTGCACAATGGGCA
AGCTTTCTAGACCAT
FMO01466.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:24:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| RPA2-RB | 905 | CG9273-RB | 102..839 | 9..746 | 3690 | 100 | Plus |
| RPA2-RA | 963 | CG9273-RA | 102..839 | 9..746 | 3690 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:24:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 20925264..20925850 | 670..84 | 2935 | 100 | Minus |
| 2L | 23513712 | 2L | 20925099..20925174 | 746..671 | 380 | 100 | Minus |
| 2L | 23513712 | 2L | 20925913..20925975 | 84..22 | 315 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:24:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HMS-Beagle | 7062 | HMS-Beagle Beagle 7062bp | 6359..6402 | 48..6 | 118 | 77.3 | Minus |
FMO01466.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:42 Download gff for
FMO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG9273-RA | 94..839 | 2..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:04 Download gff for
FMO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RPA2-RA | 97..842 | 2..751 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:38 Download gff for
FMO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| RPA2-RA | 97..842 | 2..751 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:38 Download gff for
FMO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 20925095..20925174 | 671..751 | 96 | <- | Minus |
| 2L | 20925264..20925850 | 84..670 | 100 | <- | Minus |
| 2L | 20925914..20925975 | 22..83 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:04 Download gff for
FMO01466.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 20925095..20925174 | 671..751 | 96 | <- | Minus |
| arm_2L | 20925264..20925850 | 84..670 | 100 | <- | Minus |
| arm_2L | 20925914..20925975 | 22..83 | 100 | <- | Minus |
