FMO01467.5prime Sequence
734 bp (734 high quality bases) assembled on 2008-03-18
> FMO01467.5prime
CAGTCGACATGTCACGGCTAGCTTTATTGCGCAATTTGGTCACTCAGCGG
CAAAATTTGTTGCCCACCAACTTTGCCAGGTTAAAATGTGCGGCGGCGAT
GCACTGGAGTCCACATTTGCGACAGGAAGCGTCGCGCGATGGCGGCGGAT
CCCTTCAAAGATCGCAGGATAACACCCAGGTGTCGACGGATGTGCGCCCC
ATTGGCGAGAAGATCAAGGAGAACACCAAGACGGCCAGTTATACGGCGAT
TATAATCGCCGGATTAGGGGTGACCTGCGTGATGTTCTTTGCCATATTCC
GAGAGCTATTCTCCAGCGAAAGCCCGAACAATATATACGCGGACGCGTTA
AGACGTGTGGTCGAAGATCCGCGGGTACAGGATGCAATTGGTGCGCCCAT
CAAGGGATTCGGCGAGACATCCAGGCGCGGTCGCAGACAGCATGTGGCGC
ACTCGAGCTACGAGCGCAATGGAAAGCCCCACATGCGGATGCAGTTTTAT
GTGCAGGGCTTGAGGAACAAGGCCACCGTGCAGCTGGAGTCCAGAAGGAG
TGACTCTGGTAAACTGGAGTATCGTTATCTGTTCGTGCAATTGGATCACT
ATCCCCGCACCACCATCATCCTTGAGGACAACCGTGCATTTGACCCCACC
CCCGAGCCAGCGTCCGCTGGATCTTCCTTTGGCAACCTAGCCCTGATGTC
CAATAGCCGGGATAAGGCAAGCTTTCTAGACCAT
FMO01467.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 18:59:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7382-RA | 888 | CG7382-RA | 85..792 | 9..716 | 3480 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 18:59:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 5519212..5519622 | 548..138 | 1995 | 99 | Minus |
| 2L | 23513712 | 2L | 5518989..5519157 | 716..548 | 845 | 100 | Minus |
| 2L | 23513712 | 2L | 5519683..5519812 | 138..9 | 650 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 18:59:06 has no hits.
FMO01467.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:43 Download gff for
FMO01467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7382-RA | 70..790 | 1..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:18 Download gff for
FMO01467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7382-RA | 77..797 | 1..722 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:49 Download gff for
FMO01467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7382-RA | 77..797 | 1..722 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:49 Download gff for
FMO01467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 5518984..5519156 | 549..722 | 98 | <- | Minus |
| 2L | 5519212..5519621 | 139..548 | 99 | <- | Minus |
| 2L | 5519683..5519820 | 1..138 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:18 Download gff for
FMO01467.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 5519683..5519820 | 1..138 | 97 | | Minus |
| arm_2L | 5518984..5519156 | 549..722 | 98 | <- | Minus |
| arm_2L | 5519212..5519621 | 139..548 | 99 | <- | Minus |
