FMO01468.5prime Sequence
689 bp (689 high quality bases) assembled on 2008-03-18
> FMO01468.5prime
CAGTCGACATGGCCTCCATTGACGAGGGCTCGCGCGTTGAGCGGAGATTC
TGCGCAGTCGGCAACCACACGCTGCGGAAGCCGTATCGCCAACTGAACAA
CAAATATTTGGTGCGCTTCGCCTGTTTGCTGAACAGCGAAATTCGGGCGG
GCAACCTCATCTGCTGCAAGTGCTACACGGACCTGGTGCGACTCTACCGG
AAGAAGAACGACAATGCCAAACGGCACAAGATGGCCAGGGAGACTGCCGC
GAGCATTACGGACGTCAGCGGCAGTCAGTCATCGTCGCACCAAAGTGCGC
CCTCTTTGCATGTCTCTGGCCAAAGTTCCGAATTCGGTGCCTCATACAGT
GAGGGGGGCATTGTGACTCCCGATGAAGAGCTGTGCTCCCACAGAAGCTT
AAGTCAAGATTCAGACAATGTGCCTACTACCAGCGCTGCAGCGATCCAAA
AACGCCAGCTTGCGAGGGCAAACCTAATGGTGAAACCATCGCAGAGGCTG
AGCTTGGCCCAGACTACTCCGGATTGTGACGACTACGACCCCAACTCGAA
TCTCAGTTTGAACGCCGTGAATGGCACGCGACTGCCGCACATTCAGCCGA
TTCCAAAGAGGCGCCCGACCGTCCTGGACAAGCAGTCCATGGATATTTAC
TTGATGGGAACCACAGGTGGTGCAAGCTTTCTAGACCAT
FMO01468.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:53:35
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| HipHop-RB | 1183 | CG6874-RB | 137..799 | 9..671 | 3285 | 99.7 | Plus |
| HipHop-RA | 1124 | CG6874-RA | 78..740 | 9..671 | 3285 | 99.7 | Plus |
| ms(3)K81-RA | 711 | CG14251-RA | 513..597 | 531..615 | 200 | 82.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:53:33
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 18821307..18821969 | 9..671 | 3285 | 99.7 | Plus |
| 3R | 32079331 | 3R | 26876364..26876448 | 531..615 | 200 | 82.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:53:33 has no hits.
FMO01468.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:45 Download gff for
FMO01468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6874-RB | 34..705 | 1..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:46 Download gff for
FMO01468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HipHop-RA | 74..740 | 1..671 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:01 Download gff for
FMO01468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| HipHop-RA | 74..740 | 1..671 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:01 Download gff for
FMO01468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 18821298..18821969 | 1..671 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:46 Download gff for
FMO01468.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 18814398..18815069 | 1..671 | 99 | | Plus |
