FMO01469.5prime Sequence
593 bp (593 high quality bases) assembled on 2008-03-18
> FMO01469.5prime
CAGTCGACATGGCAGCGATTTTACGTAAAACCCTAATTCTTGCGGGAAGC
CTGCATAGGAGTTTTGCCTCCGCCGCCAAGGCCGCAAAAGCAAAGCCCGT
CAAAACCAGCACCATTTCAGCTGTCGGCGAGTCCATCGCCGCCAAGGGCT
TCTTGCGTCCCCATAAGCCGTACTCCCCACCTGCAGATGCCGCCGAACGT
ATTCGAACCGTAGCCGCCTCGCTTCAACTGAAATCCGACCAGTTGGGGAA
TCTCTCCGAGAAATTCGAATTCCTGAACGCGTGCTTCCAGGAGCTGCAGC
ACGGAGTGCCCAACTCCCAGGTACATGAACTGCGCACCGTCAGCGATGTT
ATCGCTTTCTACCAAACAGCTGTGGACACCACCGTGCCGTTTGATGCACT
GAAGCGCATCGAGCTGCCGGAGAATTTGCACATCCAGTACGAGTACGTGC
GATTCCATCCCGAGACAGATACCAAATTCGACGGCAAAACGGCTTTCCCC
AAGAGCTCCACCCTAGTCACCGGTCTCAAGTACCGTGGAAAGTACGAGGG
ACACGAAGCCAAGCGATCCTGGCCTGCAAGCTTTCTAGACCAT
FMO01469.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| mRpL50-RA | 739 | CG8612-RA | 45..611 | 9..575 | 2835 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 7243208..7243635 | 575..148 | 2140 | 100 | Minus |
| 3L | 28110227 | 3L | 7243694..7243803 | 148..39 | 550 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:17:41 has no hits.
FMO01469.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:47 Download gff for
FMO01469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8612-RA | 38..610 | 1..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:36 Download gff for
FMO01469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL50-RA | 39..611 | 1..575 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:51 Download gff for
FMO01469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| mRpL50-RA | 39..611 | 1..575 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:51 Download gff for
FMO01469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 7243208..7243634 | 149..575 | 100 | <- | Minus |
| 3L | 7243694..7243803 | 39..148 | 100 | <- | Minus |
| 3L | 7243860..7243895 | 1..38 | 92 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:36 Download gff for
FMO01469.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 7236308..7236734 | 149..575 | 100 | <- | Minus |
| arm_3L | 7236794..7236903 | 39..148 | 100 | <- | Minus |
| arm_3L | 7236960..7236995 | 1..38 | 92 | | Minus |
