FMO01470.5prime Sequence
854 bp (854 high quality bases) assembled on 2008-03-18
> FMO01470.5prime
CAGTCGACATGCTCTGCGAGGATCAGCACATGTCCGTGGAGAACACACCG
CAGAAAGGCTCCGGCAGCCTGAATTCCTCAGCATCCTCCATTTCGATCGA
TGTGAAGCCCACCATGCAGAGCTGGGCCCAGGAGGTCCGCGCGGAGTTTG
GCCACAGTGACGAGGCCTCCAGTTCCTTGAATAGCAGCGCTGCCAGCTGC
GGTTCCTTGGCCAAAAAGGAGACAGCCGACGGTAATCTGGAGTCCAAAGA
TGGCGAGGGCCGGGAGATGGCATTTGAGTTCCTGGATGGCGTCAACGAGG
TAAAGTTCGAGCGCCTGGTCAAGGAGGAGAAGCTAAAAACGCCCTACAAG
CGCCGACACTCGTTCACGCCGCCCAGCAACGAGAACAGTCGCTCCAACAG
TCCAAACAGCAGCAACTCCTCGGCCAACGGAGATGCAGCTGCGCCCAAAG
GCGGCAACAATCCCCATTCGAGGAACTCAAAAAAGTCTGGCAACTTCCGC
GCCCACAAGGAGGAGAAACGGGTGCGCCACAACAGCTACACGTCCTCCAC
CTCATCGTCATCCTCCTACACCGAAGCCGATCCCGCCATCCTAAGTCGCA
GGCAGAAGCAAATAGATTACGGAAAGAATACTGCCGCCTACGAGCGCTAT
GTGGAAATGGTGCCAAAGGACGAGCGGACTCGCGATCATCCGCGCACCCC
GAACAAGTATGGAAAGTACAGCCGCCGCGCCTTCGATGGGCTCGTGAAGA
TCTGGCGCAAAAGCCTCCACATCTATGATCCACCTACACAAGCGCGCGAC
ACGGCCAAGGACAGTAATTCCGACTCGGATTCTGACGCAAGCTTTCTAGA
CCAT
FMO01470.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:29:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Slbp-RA | 1132 | CG11886-RA | 126..955 | 7..836 | 4150 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:28:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 29152251..29152924 | 836..163 | 3370 | 100 | Minus |
| 3R | 32079331 | 3R | 29152983..29153141 | 165..7 | 795 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 22:28:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2811..3033 | 374..612 | 151 | 57.8 | Plus |
FMO01470.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:27 Download gff for
FMO01470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11886-RA | 103..936 | 1..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:45:27 Download gff for
FMO01470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 122..955 | 1..836 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:09:41 Download gff for
FMO01470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Slbp-RA | 122..955 | 1..836 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:09:41 Download gff for
FMO01470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 29152251..29152922 | 165..836 | 100 | <- | Minus |
| 3R | 29152984..29153145 | 1..164 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:45:27 Download gff for
FMO01470.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 24977973..24978644 | 165..836 | 100 | <- | Minus |
| arm_3R | 24978706..24978867 | 1..164 | 98 | | Minus |
