FMO01472.5prime Sequence
416 bp (416 high quality bases) assembled on 2008-03-18
> FMO01472.5prime
CAGTCGACATGTCGCTGAATCCGCAGTACGAGGACATTGGCAAGGGATTT
GTGCAGCAGTACTATGCGATATTCGATGACCCGGCGAATCGGGCGAACGT
GGTTAATTTCTATAGCGCTACCGACTCATTCATGACCTTTGAAGGCCACC
AAATACAGGGGGCACCCAAGATTCTGGAAAAAGTTCAGAGTCTGAGCTTT
CAGAAGATTACCAGAGTGATAACCACAGTGGACTCGCAGCCAACTTTCGA
TGGCGGAGTTCTGATCAACGTCCTTGGAAGACTACAGTGCGATGACGATC
CCCCACATGCCTTCTCGCAGGTCTTTTTCCTGAAGGCCAACGCAGGCACC
TTCTTTGTGGCCCACGACATCTTCCGTCTCAACATCCACAACTCTGCCGC
AAGCTTTCTAGACCAT
FMO01472.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:36:31
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ntf-2-RE | 3078 | CG1740-RE | 146..535 | 9..398 | 1950 | 100 | Plus |
| Ntf-2-RA | 755 | CG1740-RA | 146..535 | 9..398 | 1950 | 100 | Plus |
| Ntf-2r-RA | 771 | CG10174-RA | 119..508 | 9..398 | 1515 | 92.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:36:29
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 18454767..18455156 | 9..398 | 1515 | 92.6 | Plus |
| X | 23542271 | X | 21038743..21038856 | 285..398 | 570 | 100 | Plus |
| X | 23542271 | X | 21035614..21035722 | 9..117 | 545 | 100 | Plus |
| X | 23542271 | X | 21036536..21036637 | 186..287 | 510 | 100 | Plus |
| X | 23542271 | X | 21036399..21036470 | 117..188 | 360 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:36:30 has no hits.
FMO01472.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:49:31 Download gff for
FMO01472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1740-RA | 133..530 | 1..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:43:38 Download gff for
FMO01472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntf-2-RA | 138..535 | 1..398 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:23:59 Download gff for
FMO01472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ntf-2-RA | 138..535 | 1..398 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:23:59 Download gff for
FMO01472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 18454767..18455155 | 9..397 | 92 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:43:38 Download gff for
FMO01472.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 18454767..18455155 | 9..397 | 92 | <- | Plus |
