FMO01487.5prime Sequence
1176 bp (968 high quality bases) assembled on 2008-03-18
> FMO01487.5prime
CAGTCGACATGTCAGCGAGCGAAGAAACAATAGCGGACAGTCAGGTCTCC
GAGAATGTGGAGGATGTGGAATTCGTAGACATGGCGTTCACAAAGGAGTT
GCGTAAAGCCACAAAAGATGTGCATAATCTTACTGATGTTCTAGTGAATG
CAAAGATCGCACTTGCCCTTTCTGATGACGAGGTCTGGTATGATGGACTC
CTGGCCTTCTACGAACTGTACAAATTCTTTGAGACCCATCTGCCGGAGCG
CCTGCTGCCCAAAGAATTCCACAGAACAGCGGCATTTGAAAGGGATTTTG
CCTATTTCTACGGTTCCGATTGGAGGAAGGACTACGAAATTCGCCCGGCG
GTCCAGAAATATCTCGAGCATCTGGAAAAGATTGCCGCACAGAACGAACT
CTTGCTGTTCGCCTACTCCTATCAGATGTACATGGCTTTGATGTCCGGCG
GACAAATGTTGCAGAAGAAGCGTATGATCGCTCGTAAAATGTGGATCTTT
TCAAAGAACGATGACGAGGAGCAGCAGAAGCAGGCCGACAAGGAGGCAGA
GTTGGCCACCGCCAGAGCTGCCGATGGCTCTGTAGACAAAGACGACTTGG
AGGCCAGGCCAATGCCTGCCCAGGTTACCATTTGCCCGCCGGGATGTGAG
GCCACATATTTTCCTGAGAAGATCTCTGTCTTAAAGGCCAAACTAAGGCG
CGTTTTCAACAATCACTACGGAGCTTTTGACGATGATTTGCGTGCTGCTT
TTATTGAGGAAAGTCGCAACGTATTTCGCTTAATATAGAAAGTAGTACGG
ACCATCAAAGGCGTGAATCGTGCCAATCTTAGGAAGCTGGGCCTCGCACT
AATCTTTGTTTCAAGTATTGTAGTGGCCGTGAAATTTGCTCTCAAGCAGC
TTTCTAGACTATCGTTTGGCGCCGCGGGCCCAGGTAGTGGTCATATCATA
TCATATCATAATCATAATCACACTAGCTAGGAGATCTGTCATGACTAGTG
CTGATCTCACCATAAAAACGCCGCGCACGACGTCTGACAATCGAATGGAT
TCGGAGTCATACTGATTATCAAAGGGTCAGGCAGCTCGATTCCATACGCC
TCGGCCCTGACCTATGGATCGTGAATCATAAGACCTCTCGGCATTGAAGG
CCATCCAAACTGCAGTAGATGATACC
FMO01487.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ho-RA | 1123 | CG14716-RA | 127..1016 | 7..896 | 4375 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 11680083..11680589 | 165..671 | 2535 | 100 | Plus |
| 3R | 32079331 | 3R | 11680643..11680869 | 670..896 | 1015 | 96.5 | Plus |
| 3R | 32079331 | 3R | 11679869..11680027 | 7..165 | 795 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 22:48:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| R1-2 | 3216 | R1-2 R1-2 3216bp | 3069..3122 | 160..214 | 110 | 69.1 | Plus |
FMO01487.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:50:09 Download gff for
FMO01487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG14716-RA | 106..1000 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:11 Download gff for
FMO01487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ho-RA | 122..1016 | 1..896 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:41 Download gff for
FMO01487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ho-RA | 122..1016 | 1..896 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:41 Download gff for
FMO01487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 11679864..11680027 | 1..165 | 97 | -> | Plus |
| 3R | 11680084..11680589 | 166..671 | 100 | -> | Plus |
| 3R | 11680645..11680869 | 672..896 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:11 Download gff for
FMO01487.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 7505586..7505749 | 1..165 | 97 | -> | Plus |
| arm_3R | 7505806..7506311 | 166..671 | 100 | -> | Plus |
| arm_3R | 7506367..7506591 | 672..896 | 98 | == | Plus |
