FMO01491.5prime Sequence
1217 bp (980 high quality bases) assembled on 2008-03-18
> FMO01491.5prime
CAGTCGACATGCCCCTCGTGGTGATTACGGGCCTGCCAGCCAGCGGAAAG
AGCACACGTGCCCGCCAGCTACGGGATCATTTCGTGGAGCGCGGCAGGAA
GGTGCATCTAATCAGCGAAAACGAGGCAGTGCCCAAGGCGGGTTTTGGAA
AGAATTCCCATACAGGTGATTCGCAGAAGGAGAAGGTGGTACGTAGCGAT
CTTAAGTCGGAAGCCTCGCGTCACCTTAACCAGGAGGATCTGGTCATCTT
GGACGCCGGGAACTACATCAAAGGCTACCGCTACGAATTGTACTGCATGT
CCAAGGTGTCAAGGACCACCCAGTGCACTGTGTTTACCTGCATACCCCAG
GAGGAGGCGTGGACCTTTAATAGCCAAAGAACGGCGCCGGATGAACTGCC
TGGCGACAGTGAAAGAGTTCAGCCGGTGGACAACTCGGATGTTCCCTACA
CCAGAGAGACTTTTGATGCTCTGTGCCAGCGCTACGAGGAGCCGCAGAGC
AACAACCGTTGGGACAGTCCGCTGGTGGTAGTCTTGCCCAAGGACACGCT
CGACATGGAGGCCATCTACAAGGCCTTGTACGAGTCCCAGCCACTGCCAC
CCAACCAGAGTACTTATAATGCACCGCTGGGAACAACCAACTACCTGTTC
GAACTGGACAAAATCGTGCAGGCGATCATCAAGGAGATCCTCGGCGCCGT
CAAGATCAAGGCCTTCGGCCAGCTGCGCATCCCAGGGAGCAGAATCCCGT
GAAGGTCGCCACTTCGATGAATGCCCTCCAGCTGAACCGCCTGCGCCAGA
AGTTCATCACGAGCACGTGCCACGCCAGCCAGACGTCACCCACTCCGCTG
GGAGCAGGTGCCGCACTTGTTCGTGCAGTTCATCAATGCCAACACGATCG
GCTGCGCAAGCTTTCTAGACCATTCGTTTGGCGCGCGGGCCAGGTAAGTG
GTCATATCATATCATAATCATAATCATATCCCACTAGCCTAGAAGATCCT
GTCATGACTAGTGCTTGATTCCTCACATAAAAACGCCCGCGCACGACGTT
CTGAACAATCCAGAATGGAGTTCTGAGGTCATACTGAATCTATCACGAGT
CCAGCGAGCTCGAAATCAGTACGCTCCCGCCCCTGCCCTCATCCGGATAC
GGTGATCTATAGCATCCGCGCGAACTGGAAGCCATTCAAAAACGGACGTG
TAGTACACACTCGTGAC
FMO01491.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:10:55
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3587-RA | 1105 | CG3587-RA | 80..977 | 8..905 | 4445 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:10:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 1940708..1941057 | 272..621 | 1750 | 100 | Plus |
| X | 23542271 | X | 1940386..1940652 | 8..274 | 1335 | 100 | Plus |
| X | 23542271 | X | 1941124..1941408 | 621..905 | 1330 | 99.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:10:54 has no hits.
FMO01491.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:55 Download gff for
FMO01491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3587-RA | 151..1052 | 8..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:31 Download gff for
FMO01491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3587-RA | 151..1052 | 8..911 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:53:56 Download gff for
FMO01491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3587-RA | 80..981 | 8..911 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:53:56 Download gff for
FMO01491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 1940386..1940651 | 8..273 | 100 | -> | Plus |
| X | 1940710..1941056 | 274..620 | 100 | -> | Plus |
| X | 1941124..1941412 | 621..911 | 98 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:31 Download gff for
FMO01491.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1834419..1834684 | 8..273 | 100 | -> | Plus |
| arm_X | 1834743..1835089 | 274..620 | 100 | -> | Plus |
| arm_X | 1835157..1835445 | 621..911 | 98 | == | Plus |
