FMO01493.5prime Sequence
876 bp (876 high quality bases) assembled on 2008-03-18
> FMO01493.5prime
CAGTCGACATGCGGTTTGCCCAAATAATTGTGGGCCCGGCAGGCAGTGGC
AAGTCGACGTACTGCAGCTTAATGCAGCAATATGCGATGGACTGCAAGAG
AAATGTTCAGGTGGTGAACCTCGATCCGGCGGCAGAGCACTTCACCTACA
ACCCGCTGACGGACATTCGCGATCTAATCCACCTGGACGATGCCATGGAG
GACGAAGAGCTGCACTACGGACCGAACGGCGGCCTCATCTTCTGCCTGGA
GTTCTTGATCGAGAACCAGGAATGGCTGAAGGAACAGCTCTGCGGCGGCG
AGAACGAGCTGATGGTGGGCGAGCCGGATGATGACTACATCCTGTTCGAC
ATGCCCGGCCAGATCGAGCTCTTCACTCACCTAAAGATGGGCAGACAGCT
GGTGGAACTGCTCGAGTCCTGGAACTTCCGCACATGCGTCGTCTTCTGCT
TGGACTCGCAGTTCATGGTGGACGGGGCCAAGTTCATTTCCGGCACCATG
GCCGCGCTCAGTGTGATGGCCAACATGGAGCAGCCGCACATCAATGTGCT
GACCAAAGTGGATCTGCTGAGCAGCGATGCGCGGAAACAGCTGGAGATGT
ACCTGGAACCGGATGCCCACAGTCTGATGGGCGAGCTGACCATCGGGACT
GGTTTTGGCGAGAAATACGCAAAGCTTACGCACGCTATTGGCGCGCTAAT
TGAGGATTTCAGTTTGGTGAGATTTTTCCCGTTGGATTCCCAGGACGAGG
AGAGCGTGGGCGATCTTCTGCTACAAATTGACAGTATCTTGCAGTACGGC
GAGGATGCAGACGTGAACGTTAAAGGACTTTGATGAACCGGAGGAAGGGG
ATCAGGATGCAAGCTTTCTAGACCAT
FMO01493.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG2656-RA | 1016 | CG2656-RA | 92..941 | 8..858 | 4215 | 99.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:24
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 7144921..7145581 | 52..712 | 3290 | 99.8 | Plus |
| 3R | 32079331 | 3R | 7151048..7151195 | 710..858 | 695 | 99.3 | Plus |
| 3R | 32079331 | 3R | 7144815..7144860 | 8..53 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:17:25 has no hits.
FMO01493.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:58 Download gff for
FMO01493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 67..926 | 1..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:22 Download gff for
FMO01493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 86..945 | 1..862 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:55:40 Download gff for
FMO01493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG2656-RA | 86..945 | 1..862 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:55:40 Download gff for
FMO01493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 7144809..7144860 | 1..53 | 92 | -> | Plus |
| 3R | 7144923..7145581 | 54..712 | 99 | -> | Plus |
| 3R | 7151051..7151199 | 713..862 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:22 Download gff for
FMO01493.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 2970531..2970582 | 1..53 | 92 | -> | Plus |
| arm_3R | 2970645..2971303 | 54..712 | 99 | -> | Plus |
| arm_3R | 2976773..2976921 | 713..862 | 98 | | Plus |
