FMO01496.5prime Sequence
776 bp (776 high quality bases) assembled on 2008-03-18
> FMO01496.5prime
CAGTCGACATGCTGCTGCCAACGGTCAGCGGCCAATCCGCCGCAGGATGC
AAATGGAAAAACTGCTGTCGCCGCAGCTGGGAAATGCTGATGGCGCCCGT
ATCGCCCAAGAACCTCAGGACCACGGCGCTCTTGACGAGCATCTACCAGT
TGTTAATCTCCCACTGCGCCCTTTTCCTGGTTCTCCTGGGACTGGCGCAT
GCCGAACAGATGTGCGAGGTGCTGGAGCTGGACATCTTGGACCAGAAGGA
CAATGGTTTCTACAACATGTCGCCCTTTCACAACGATCTTCGCCTGCAAA
CCGCTGCCCAATTGGCCGTCGCCACGGAGAATCTGCTCTACGTGATGGCT
GGTATCGCGGGTACCTACGCCCTGAGTGCCATATTCCTGTTTTTCGGAGT
CTTCAAAAATCGGCCGGGCCTAATCATACCCTGGCTGGTTGTGGAGTTCC
TATTAATGATTGGTTTGGGGGCACTGGTCTTCATGCTGAGGGATACAAAA
ATCGTGCAATTGCTGGGTGGTCAAGTGCCCTACTTTATCATTTGCTACAT
CTTGATCTGCATGGATTACTGCAAGTGGTATGTGATGCATAGCTTCTACC
AGAGTCTACGCACCATGAATAAGCTTCGAGAGATTGCCACTGTGGCCATA
CCATGTCCAGCTCCAGGAGCCATACCCTATCGTTTCCAACGCGAGCACAT
GTATCTGGGCAGCAATGGATATAAGCACATTCTAACCGAGTCTCCCGATG
GACAGTGTGCAAGCTTTCTAGACCAT
FMO01496.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Fie-RB | 1443 | CG1079-RB | 116..865 | 9..758 | 3750 | 100 | Plus |
| Fie-RA | 1600 | CG1079-RA | 273..1022 | 9..758 | 3750 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 3893532..3893914 | 152..534 | 1915 | 100 | Plus |
| 3L | 28110227 | 3L | 3892846..3892993 | 9..156 | 725 | 99.3 | Plus |
| 3L | 28110227 | 3L | 3893978..3894114 | 535..671 | 685 | 100 | Plus |
| 3L | 28110227 | 3L | 3894169..3894255 | 672..758 | 435 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:31:14 has no hits.
FMO01496.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:47:51 Download gff for
FMO01496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1079-RA | 266..1025 | 1..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:51 Download gff for
FMO01496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fie-RA | 266..1025 | 1..762 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:01:30 Download gff for
FMO01496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Fie-RA | 266..1025 | 1..762 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:01:30 Download gff for
FMO01496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 3893978..3894114 | 535..671 | 100 | -> | Plus |
| 3L | 3894169..3894258 | 672..762 | 97 | | Plus |
| 3L | 3892839..3892989 | 1..152 | 98 | -> | Plus |
| 3L | 3893533..3893914 | 153..534 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:51 Download gff for
FMO01496.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 3892839..3892989 | 1..152 | 98 | -> | Plus |
| arm_3L | 3893533..3893914 | 153..534 | 100 | -> | Plus |
| arm_3L | 3893978..3894114 | 535..671 | 100 | -> | Plus |
| arm_3L | 3894169..3894258 | 672..762 | 97 | | Plus |
