FMO01501.5prime Sequence
1242 bp (1019 high quality bases) assembled on 2008-03-21
> FMO01501.5prime
ATAATACAAAGTTATCAGTCGACATGACGGACGTATCGCATGAACTGGGC
GCCTTGCGCTTCGTGGTGGACTCACCACTGTCCTCCAAGGTGGCCATGTT
CAACAACCAGGCCACGCAGCACAAGCAGTCGCAGCTGCTGAATCCATTTT
CCCAGGACGGACGCGCCGCCTCGCCGAAACCCACTTTCTCGAAGGATCAG
TATGGAAAACCACTGGCCGGCAGCCTTACAGAGATGCGTGGCCAGAAGGC
CAACATCCACGTGATGAAGGAGATGCTGGAGCTCTGCCAGATCATCAATT
CGGAGGGCTACGACGTCAAGGACGAGCCCACTATGCGTGTGATCCCCTTC
GGCGAACTTTTTAATATCTATAACTACATATCCGACAAGGTGGTGGGCAT
CCTGCTGCGGGCCCGCAAACACAAGTTGGTAGACTTCGAGGGCGAGATGT
TGTACCAGCGGAGGGACGATGACGTTCCCGTCTTTCTGCTGAAGCCCATC
AAGGAAATACGCAGTGAGATGGAGGCCAAGATTGAAGACATCAAGAGGGC
GGCTAGTCCAGCGCCTCCGCAGTCCACCTCGGTGCTGATGGATCGCAGTG
CTCACGAACAAAAACTGAAGTCGAGGACTCCCTCGCCGGCTGTGGGCAAG
TCCGCCAAGTCGAAGTCAGCGTCGCCGGCACCCAAGGCTCCTGTACCTGT
TCCTGCGCCTGCTGCAGAAGTCACGCCTGTGGCTGGGCCCACAACTTCTG
CAGAACCTGCTCCTGTGGCAGAGTCCACTATGGCAGCAGTTCCAGCTCCG
TCTACAGAGCCCACACCGGCAACAGCTCCTGCTTCGAGTACCGGTTGAGA
TCGAGCCAGCCAAGCCAGAGGTGACCGAACAGGCGCTCGTGGCTGTGATA
GTCACAGAAGCACCATCCACAGAAGAATCACACCAACCATCAGCGAACGG
AAGCGGAGGAAGCACTCGCTGCAGTTGCACCGGCAGACCTGCTGATGACT
TACTCACATGTGATTGAGCCACGCGAGTTTGTACGCACGTCAGCGTGGAG
CAGCTGGCGCCCAGTCCGGAACGCCAGCGAGTCCTTCGCCAGAACAGTTC
CATTCCGACAAGTCGAGCTCGCTTGCAGCTTCTAGACAATTCGTTGGGCG
CCCGGCCAGTATGTCCTAACCTTATCTTAAATCTAATCTATATCCCACCT
AGCCTAGGGAAATCTCTGGCCTAGGTAGATTGAGGGCTGTGA
FMO01501.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG3630-RD | 1672 | CG3630-RD | 203..1295 | 23..1106 | 5010 | 97.9 | Plus |
| CG3630-RC | 1786 | CG3630-RC | 317..1409 | 23..1106 | 5010 | 97.9 | Plus |
| CG3630-RA | 1948 | CG3630-RA | 479..1571 | 23..1106 | 5010 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2171155..2171904 | 366..1106 | 3015 | 96.8 | Plus |
| X | 23542271 | X | 2170788..2171085 | 68..365 | 1490 | 100 | Plus |
| X | 23542271 | X | 2168188..2168234 | 23..69 | 235 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:20 has no hits.
FMO01501.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:10 Download gff for
FMO01501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3630-RA | 469..1565 | 16..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:45 Download gff for
FMO01501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3630-RA | 475..1571 | 16..1106 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:01 Download gff for
FMO01501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3630-RA | 475..1571 | 16..1106 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:01 Download gff for
FMO01501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2168184..2168233 | 16..68 | 94 | -> | Plus |
| X | 2170789..2171085 | 69..365 | 100 | -> | Plus |
| X | 2171155..2171904 | 366..1106 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:45 Download gff for
FMO01501.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 2062217..2062266 | 16..68 | 94 | -> | Plus |
| arm_X | 2064822..2065118 | 69..365 | 100 | -> | Plus |
| arm_X | 2065188..2065937 | 366..1106 | 96 | | Plus |
