FMO01503.5prime Sequence
1022 bp (1022 high quality bases) assembled on 2008-03-21
> FMO01503.5prime
ATAAGACAAAGTTATCAGTCGACATGGCCGCCAACAACTTGCGACAAATC
CCGCTGACCTGCAGTGGCCACACGCGACCCGTGGTCCACCTGGACTTCAG
CGACATCTGCGACGCCGGCTACTTTCTCATCTCGGCCTGCAAAGATGGCA
GCCCGATGCTGCGGCACGGCGACACCGGCGACTGGGTGGGCACCTTCGAG
GGACACAAGGGCGCCGTGTGGAACGCCACGCTGAACCGAAATGCCACCCT
GGCCGCCTCCGGAGCGGCCGACTTCACCGGCAAGGTGTGGAATGCGGTGA
CCGGGGCCGAGATACACAGCTTCCAGCACAAGCACATCGTGAAGAGCGTG
GCCTTCGACAGGGATTCCGAGAACATAGTGACTGGCAGCAACGAGAAGCT
GGTGCGGGTCTTCAACCTGGAGCAGCCCGAGGCGCAGCCGGAGGAGTACG
CCGGACATACGGGGGCCATCAAGCGGGCGCTCTTCTGCCGCGGCGACAAG
TGCATCATCTCGGCGGCCGAGGACAAGACGGTGCGCCTCTGGGACCGCAT
GACGGGCATCGAGGTGCAGCGCCTGCAGTTCAACAGCAATCCGAACAGCC
TAGAGATCTCCAGCGACAACCACATACTGACCATATCGCACGGCTCCTCG
ATTAGCTTCTGGGAGATCGACACGCTGAAGAAGCTGAAGGAGGTGAAAGT
GCCGACGAACGTGGCGTCGGCCAGTTTGCATCCGGATAAGCATGTGTTTG
TTTGTGGCGGCGAGGACTTTAAGATGTACAAATTCGACTACATCACAGGA
AACGAAATTGAATCTTTCAAGGGACATTTCGGGCCCGTGCACAGCGTGAA
GTTCAGCCCGGATGGCGAACTCTATGCCAGCGGCTCCGAGGACCGCCCTC
TCCGGCTGGTGGCAGACCACCGTGGGCAGACCTACGGCTTGTGAAGTGCA
CGGAGGCCCGCGGACCTGGGCAATTCATCAGCTCGCGCGCGAGGTGCAGG
CAACGCAAGCTTTCTAGACCAT
FMO01503.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:58
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| wmd-RB | 1661 | CG3957-RB | 433..1415 | 23..1003 | 4745 | 99.2 | Plus |
| wmd-RA | 1606 | CG3957-RA | 378..1360 | 23..1003 | 4745 | 99.2 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 23545326..23545993 | 810..143 | 3340 | 100 | Minus |
| 2R | 25286936 | 2R | 23545069..23545264 | 1003..810 | 660 | 96 | Minus |
| 2R | 25286936 | 2R | 23547490..23547611 | 144..23 | 610 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:17:57 has no hits.
FMO01503.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:12 Download gff for
FMO01503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG3957-RB | 356..1344 | 16..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:48 Download gff for
FMO01503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wmd-RA | 372..1360 | 16..1003 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:04 Download gff for
FMO01503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| wmd-RA | 372..1360 | 16..1003 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:04 Download gff for
FMO01503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 23545069..23545263 | 811..1003 | 95 | <- | Minus |
| 2R | 23547490..23547617 | 16..144 | 97 | | Minus |
| 2R | 23545326..23545991 | 145..810 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:48 Download gff for
FMO01503.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 19432592..19432786 | 811..1003 | 95 | <- | Minus |
| arm_2R | 19432849..19433514 | 145..810 | 100 | <- | Minus |
| arm_2R | 19435013..19435140 | 16..144 | 97 | | Minus |
