FMO01509.5prime Sequence
921 bp (921 high quality bases) assembled on 2008-03-21
> FMO01509.5prime
ATAATACAAAGTTATCAGTCGACATGCAGAAGTACGATAAAATGGAGAAG
ATCGGGGAGGGCACCTACGGCACGGTGTTCAAGGGTCGCAACCGCGACAC
CATGGAAATAGTGGCCCTGAAACGGGTGCGACTGGACGAGGACGACGAGG
GTGTGCCCAGTTCTGCCCTCCGGGAGATCTGCCTGCTGAAGGAGCTGAAG
CACAAGAACATTGTGCGCCTCATAGACGTCCTGCACTCGGACAAGAAACT
CACCCTGGTCTTCGAGCACTGCGACCAGGACCTCAAGAAGTACTTTGACA
GCCTCAACGGGGAGATCGACATGGCCGTCTGCAGGAGCTTTATGCTCCAA
CTGCTCCGCGGACTGGCATTCTGCCACAGCCATAATGTCCTGCATCGCGA
TCTGAAACCACAGAACCTGCTGATCAACAAAAACGGCGAGCTAAAGCTAG
CTGACTTTGGTCTCGCTAGAGCCTTTGGCATTCCCGTGAAGTGCTACTCC
GCAGAAGTGGTGACCCTGTGGTACCGACCACCCGATGTCCTATTTGGAGC
CAAGCTCTATACGACCAGCATAGACATGTGGTCCGCTGGATGCATTTTGG
CCGAACTGGCGGACGCTGGACGACCGCTGTTTCCTGGCTCTGACGTGCTC
GATCAGCTGATGAAGATCTTCCGTGTGCTGGGCACCCCCAACGAGGACTC
CTGGCCAGGAGTTTCGCACCTCTCCGACTACGTGGCGCTTCCATCTTTTC
CGGCCATCACCTCGTGGAGTCAGCTGGTACCTATGCTAAACTCCAAGGGA
CGCGACCTGCTGCAAAGCTGCTCATCTGCCGGCCAAATCAGCGAATTAGC
GCGGAGGCGCGATGCAGCATCCCTACTTTACGGACAGCAGCTCTTCGGGA
CATGCAAGCTTTCTAGACCAT
FMO01509.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:12
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Cdk5-RA | 1604 | CG8203-RA | 116..997 | 24..903 | 4345 | 99.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 15570358..15570724 | 744..378 | 1835 | 100 | Minus |
| 2R | 25286936 | 2R | 15570883..15571072 | 379..190 | 950 | 100 | Minus |
| 2R | 25286936 | 2R | 15571134..15571302 | 192..24 | 845 | 100 | Minus |
| 2R | 25286936 | 2R | 15570135..15570295 | 903..745 | 690 | 98.1 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:38:11 has no hits.
FMO01509.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:25:19 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:43 Download gff for
FMO01509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk5-RA | 109..997 | 16..903 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:53 Download gff for
FMO01509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Cdk5-RA | 109..997 | 16..903 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:53 Download gff for
FMO01509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 15570135..15570295 | 745..903 | 98 | <- | Minus |
| 2R | 15570358..15570722 | 380..744 | 100 | <- | Minus |
| 2R | 15570883..15571070 | 192..379 | 100 | <- | Minus |
| 2R | 15571135..15571306 | 18..191 | 97 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:43 Download gff for
FMO01509.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 11457640..11457800 | 745..903 | 98 | <- | Minus |
| arm_2R | 11457863..11458227 | 380..744 | 100 | <- | Minus |
| arm_2R | 11458388..11458575 | 192..379 | 100 | <- | Minus |
| arm_2R | 11458640..11458811 | 18..191 | 97 | <- | Minus |
