FMO01511.5prime Sequence
1238 bp (1059 high quality bases) assembled on 2008-03-21
> FMO01511.5prime
TATAAAACGAAGTTATCAGTCGACATGTTGGATGACCTGCCGGAGCAGTT
TGACCTGGTCGTCATAGGCACAGGCTTCACCGAGTCCTGCATCGCCGCTG
CGGGCAGCAGGATAGGCAAATCGGTGCTCCACCTGGATAGTAATGAGTAC
TACGGGGATGTTTGGAGCTCCTTCTCTATGGATGCTCTATGTGCCCGCTT
GGACCAGGAAGTCGAGCCTCATTCTGCATTGCGAAACGCAAGGTACACCT
GGCATTCCATGGAAAAAGAATCAGAAACAGATGCACAATCCTGGAATAGG
GACTCAGTGCTGGCCAAGTCGCGACGCTTCAGCTTGGATCTATGCCCGCG
CATTTTATACGCAGCCGGGGAGCTGGTGCAGTTGCTCATCAAGTCGAACA
TCTGCCGCTATGCTGAATTCCGAGCCGTGGACCATGTGTGCATGCGCCAC
AATGGTGAAATTGTGTCCGTGCCCTGCTCCCGTAGCGATGTCTTCAACAC
CAAAACACTGACCATCGTGGAAAAGCGCTTGCTGATGAAATTTCTCACCG
CCTGCAACGATTACGGCGAGGACAAGTGCAACGAGGACTCGTTGGAATTC
CGGGGACGAACGTTTCTGGAATATTTGCAGGCGCAGCGGGTGACCGAAAA
GATATCGTCGTGCGTGATGCAGGCCATTGCCATGTGCGGCCCCAGCACCA
GCTTCGAGGAGGGTATGCAGCGCACACAACGATTTCTGGGCAGTCTGGGC
CGCTATGGCAACACACCCTTTCTCTTTCCCATGTATGGCTGCGGGGAATT
GCCGCAGTGCTTCTGCCGTTTGTGCGCTGTTTATGGTGGCATTTACTGCC
TAAAGCGAGCCGTTGACGACATTGCCTTAGATTCCAATTCGAATGAGTTC
CTGCTGAGCAGCGCAGGAAAACTTTGCGTGCCAGAATGTGTCTCTGCCCC
TGGCTATACACCAGTTTCAAAGGGCATCGAGTTGAGCCGCACATCTCACG
TGGCTTGTTCATATCGTCCAGTCCCCTGGCAATGGAGGAGCTGAACCAGG
GAGGTGGTGGTGTAAATCCTTCCTTCGACTTACTTGACATGAAGGTGACG
CAAGCCTTCCTAATACCAACTGTCGCACTTACACGGAGCCTGTCCGAAGG
GTTTATTATTCTTCATCTGAACCGCCAGCGGAGACGAGGAGATCTCGCGC
CTCTCTGATATATTAGCCATTTTCCTCTCTATGCACGA
FMO01511.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:04
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rep-RA | 1923 | CG8432-RA | 136..1298 | 23..1180 | 5300 | 97.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:02
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 19492329..19493417 | 71..1156 | 4745 | 97.5 | Plus |
| 2R | 25286936 | 2R | 19492222..19492273 | 23..74 | 260 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:00:03 has no hits.
FMO01511.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:07 Download gff for
FMO01511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8432-RA | 132..1294 | 23..1180 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:37 Download gff for
FMO01511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rep-RA | 136..1298 | 23..1180 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:20 Download gff for
FMO01511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rep-RA | 136..1298 | 23..1180 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:20 Download gff for
FMO01511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 19492222..19492272 | 23..73 | 100 | -> | Plus |
| 2R | 19492332..19493417 | 74..1156 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:37 Download gff for
FMO01511.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 15379727..15379777 | 23..73 | 100 | -> | Plus |
| arm_2R | 15379837..15380922 | 74..1156 | 98 | | Plus |
