FMO01512.5prime Sequence
1178 bp (1038 high quality bases) assembled on 2008-03-21
> FMO01512.5prime
ATAATACCAAGTTATCAGTCGACATGTCCAGCAAGATGCGAAACCTCAAG
GGACGCGAGGTAGTCATAGGCATCTTCGACTACAAGCCTTTTATGCTATT
GGATTATGAAAAGCCACCATTATATTATGATCGTTTTATGAACACGACGG
ATGTAACCATTGATGGAACAGATATTCAACTAATGCTCATTTTCTGCGAG
TTGTACAACTGCACCATTCAGGTGGACACATCTGAACCATACGACTGGGG
TGACATCTACTTGAATGCCTCGGGCTATGGTCTGGTTGGAATGATCCTCG
ATAGACGAAACGATTACGGAGTAGGGGGCATGTATTTGTGGTACGAGGCG
TACGAGTATATGGACATGACTCATTTTCTGGGACGATCTGGAGTAACCTG
TCTGGTGCCCGCTCCGAACCGTTTAATCAGCTGGACGCTCCTGCTCCGAC
CATTCCAGTTTGTCCTCTGGATGTGCGTGATGCTCTGCCTTCTGCTCGAG
AGCTTAGCTCTTGGTATAACCCGTCGCTGGGAACACTCGTCGGTTGCGGC
AGGCAATTCCTGGATCAGTAGTCTGCGCTTCGGTTGCATCAGTACGCTGA
AACTTTTCGTAAATCAGAGCACCAATTATGTGACCAGCTCGTATGCTCTA
AGAACCGTCCTAGTGGCCAGCTACATGATCGACATTATATTGACCACTGT
GTACAGTGGCGGTCTGGCGGCCATCCTCACTTTGCCCACTTTAGAGGAAG
CGGCGGACTCTCGCCAACGTCTCTTCGACCATAAGCTCATTTGGACGGGG
ACTTCACAGGCCTGGATTACCACCATTGACGAGCGATCGGCCGACCCAGT
TCTTCTTGGTTTAATGGAGCATTACCGAGTTTACGATGCCAATTTAATAT
CCGCCTTCTCGCACACGGAGCAATGGGATTTGTCGTCGAGCGCTTCAGTT
TGGTCATTTGGGCACACCGAGCTAATAGAAAACGATGCCCTAAGCGCTGA
ACTATGGTGATGATATTTACTTGCATTACGGTGGCGTTGTGCCGCGAACT
GTGGCCGCACTAATGCCTACACGACTTCATTCTGCCTGCCATCTCGGGCT
TGACAATCTGGGATGGAGATCGCCGCCCGAATACATGGAGTGCCCCACGC
CAAATTGCATCTCTGGACCACTTGAAAA
FMO01512.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:11
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Ir76a-RE | 1991 | CG42584-RE | 640..1773 | 24..1137 | 5080 | 97.7 | Plus |
| Ir76a-RA | 1722 | CG42584-RA | 371..1504 | 24..1137 | 5080 | 97.7 | Plus |
| Ir76a-RB | 1761 | CG8533-RB | 410..1543 | 24..1137 | 5080 | 97.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:09
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 19802335..19802840 | 340..845 | 2530 | 100 | Plus |
| 3L | 28110227 | 3L | 19801987..19802114 | 104..231 | 625 | 99.2 | Plus |
| 3L | 28110227 | 3L | 19802898..19803048 | 846..993 | 605 | 98 | Plus |
| 3L | 28110227 | 3L | 19802161..19802277 | 227..343 | 570 | 99.1 | Plus |
| 3L | 28110227 | 3L | 19801845..19801929 | 24..108 | 425 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:03:10 has no hits.
FMO01512.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:09 Download gff for
FMO01512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8533-RA | 438..1537 | 17..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:38 Download gff for
FMO01512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir76a-RB | 404..1503 | 17..1101 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:56 Download gff for
FMO01512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Ir76a-RB | 404..1503 | 17..1101 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:56 Download gff for
FMO01512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 19801839..19801928 | 17..107 | 96 | -> | Plus |
| 3L | 19801991..19802114 | 108..231 | 100 | -> | Plus |
| 3L | 19802166..19802274 | 232..340 | 100 | -> | Plus |
| 3L | 19802336..19802840 | 341..845 | 100 | -> | Plus |
| 3L | 19802898..19803169 | 846..1101 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:38 Download gff for
FMO01512.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 19795998..19796269 | 846..1101 | 92 | | Plus |
| arm_3L | 19794939..19795028 | 17..107 | 96 | -> | Plus |
| arm_3L | 19795091..19795214 | 108..231 | 100 | -> | Plus |
| arm_3L | 19795266..19795374 | 232..340 | 100 | -> | Plus |
| arm_3L | 19795436..19795940 | 341..845 | 100 | -> | Plus |
