FMO01513.5prime Sequence
945 bp (937 high quality bases) assembled on 2008-03-21
> FMO01513.5prime
ATAAACCAAGTTATCAGTCGACATGTGCGTGATATTCTTTTGTGCGGACT
CGAATCCGCAACCGGGTGGCTACAAGCTCATCCTGGCCTCCAATCGGGAC
GAGTTCTTTGCCCGCGCCACCCTATCGGCAGCCAAGTGGGCGAATGCCGA
TCATGTTTACGGAGGGATCGATCTGGAGCCGGGACGCGAGGGCGGCACCT
GGCTGGCGATCGGCCACTCCGCTGGCTTCTTTAAGGTGGGCGCCCTGCTC
AATCTGACCGGCGAGCCCAAGCCACGCGATGCAGTTGGGCGCGGCATGAT
TGTGGCGGACTATGTTACCCGGGCGGACGAGGAGCACAGCATCCTGAACT
ACAACGAAAGGCTGCTCAAAGATTGCACCAAGTATTCTGCCTTCAACTTT
GTGTCCATCGAAATTGGATCTGCATCCCAGCCCGCTCGCGTGAAGCTGCT
GAGCAATGTGCCGCCCACGCTGGAGGATTTCCAGAACGGCGAGTGCTACG
GATTTGGCAACAGTCTGCCGCACTCTCCGTTCGAGAAGGTGCGTCATGGC
AAACAGGAGTTCGAGGCGATCGTTAAGGCTCATGGGGAAGCCAGCGTGGA
GACTCTGTCCGCCCAGCTGATGCAGTTGCTCCGCAACAAGCACAAATTCT
GGCCGGACGACGAGCTAAGACACGTGCGCCCAACTGGGGCGAGGGATTGA
GTTCCCTAAACGTCCATATCGAAGAGCATGCCTATGGCAGCCGTACACAC
TCCGTTGTCTGGTGGACAGCGAGAATAAGATGCACTTCATTGAGGAGACA
ATGACTGGATTGGATCCGCACGGCGAATGGAACAGACCCACATTGAAAAG
GGTTTTCAAAACGGCGTTGCAAGCTTTCTAGACATTCGTTTTGGCGCGCG
GGGCCCAGTAAGTGGTCATAATCATATTATAATCATAATCTATTC
FMO01513.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:38:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tango2-RC | 1302 | CG11176-RC | 297..1145 | 23..868 | 4155 | 99.5 | Plus |
| Tango2-RA | 1451 | CG11176-RA | 446..1294 | 23..868 | 4155 | 99.5 | Plus |
| Tango2-RD | 1622 | CG11176-RD | 881..1465 | 287..868 | 2835 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:38:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 13618596..13619050 | 417..868 | 2110 | 99.1 | Plus |
| X | 23542271 | X | 13617434..13617576 | 23..165 | 715 | 100 | Plus |
| X | 23542271 | X | 13618272..13618402 | 287..417 | 655 | 100 | Plus |
| X | 23542271 | X | 13617812..13617937 | 163..288 | 630 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:38:20 has no hits.
FMO01513.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:21 Download gff for
FMO01513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11176-RA | 438..1291 | 19..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:44:49 Download gff for
FMO01513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango2-RA | 441..1294 | 19..868 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:24:57 Download gff for
FMO01513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Tango2-RA | 441..1294 | 19..868 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:24:57 Download gff for
FMO01513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 13617429..13617575 | 19..164 | 99 | -> | Plus |
| X | 13617814..13617936 | 165..287 | 100 | -> | Plus |
| X | 13618273..13618402 | 288..417 | 100 | -> | Plus |
| X | 13618597..13619050 | 418..868 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:44:49 Download gff for
FMO01513.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 13511462..13511608 | 19..164 | 99 | -> | Plus |
| arm_X | 13511847..13511969 | 165..287 | 100 | -> | Plus |
| arm_X | 13512306..13512435 | 288..417 | 100 | -> | Plus |
| arm_X | 13512630..13513083 | 418..868 | 99 | | Plus |
