FMO01514.5prime Sequence
930 bp (930 high quality bases) assembled on 2008-03-21
> FMO01514.5prime
CAGTCGACATGGATGTGGAGGAGAACTACGAAAACGCCGCCGAGATGCAG
AACATGAACATGAATCTGAATCTAAATCCGAATCCGAATCCAAATTCGGA
CAGCCAGCAGCAGCAGCAACAACAGATGCAATGTGAACCGTTATTCGGGC
TCACAACCAATACAACAACAACCACAAATCCCATGATGGCCATTCCCCTG
CCCGCGCCCCCAGGGCCGCACTCCGCTCCGAACAACAGTCCAAATTCGAA
TGCGAATCCCAACTCAAATCTGAGTCCCAGTCCATCCGCAACAACCGCTA
ACGCATCCGCATCCACGATCAAGTGTCTACCGACGAACGACTTCGATATC
GACTCCCTGTTGCTGCAACAGTTCAGCTGTATGGGCACCACGGACCACGA
AGACCTCATCAGCCAGTTTCAGAGCCTAATGAACAACCAGATGAACCGGG
AATCGGCCAGGTTTTACCTAGAGATGAGTAACTGGAGCCTGCAGACGGCG
GTGGGCTGCTATCTGGACTTCTGCAGCTTACAGTCGCTGCCTTCGATGAA
GATCGTCCAGGAGAAGCAAGTGAATGCTCAGCAGCAAGCGTTTCAGCTGC
AGAACGATGGCACCGAGCGCTGGCCGAACAACTGCTATCTGACCTCGCCC
ATCCAGACGCAGCGCATCAATGTGCCCGCCCTACGTCCGGGCGAAACTTG
TGATATCCTGGCCGATATGATGCCCACGCAGCCGCCGACAATGTGGCGGC
TGTGCACTTCAAATGGCTGGTACTTTGGCGATGCCATTTGGATGATACCG
CCCGGTACGCACGCCAGCCAGGACGAACTGCAGCAGCGGATGGTGCAGCT
GATTACGTCGGAGTGAAGCCGGATATCTATCCGCAATCACATCGTGATAC
CGCGCACACCCAAGCAGCTTTCTAGACCAT
FMO01514.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:58:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG5445-RG | 2047 | CG5445-RG | 494..1406 | 5..913 | 4435 | 99.3 | Plus |
| CG5445-RF | 1740 | CG5445-RF | 187..1099 | 5..913 | 4435 | 99.3 | Plus |
| CG5445-RD | 1995 | CG5445-RD | 442..1354 | 5..913 | 4435 | 99.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:58:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 17302911..17303391 | 5..485 | 2390 | 99.8 | Plus |
| X | 23542271 | X | 17304074..17304370 | 484..780 | 1485 | 100 | Plus |
| X | 23542271 | X | 17304697..17304834 | 780..913 | 480 | 94.9 | Plus |
Blast to na_te.dros performed 2014-11-28 21:58:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2632..2668 | 106..142 | 122 | 81.1 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2345..2420 | 100..177 | 114 | 65.8 | Plus |
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2834..2867 | 100..131 | 111 | 85.3 | Plus |
| TART-A | 13424 | TART-A 13424bp | 8635..8667 | 100..132 | 111 | 81.8 | Plus |
| roo | 9092 | roo DM_ROO 9092bp | 1064..1135 | 105..177 | 110 | 63 | Plus |
FMO01514.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:22 Download gff for
FMO01514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5445-RD | 433..1353 | 1..918 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:51:46 Download gff for
FMO01514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5445-RD | 439..1359 | 1..918 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:38:50 Download gff for
FMO01514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5445-RD | 439..1359 | 1..918 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:38:50 Download gff for
FMO01514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 17304698..17304839 | 781..918 | 95 | | Plus |
| X | 17302908..17303390 | 1..484 | 99 | -> | Plus |
| X | 17304075..17304370 | 485..780 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:51:46 Download gff for
FMO01514.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 17198731..17198872 | 781..918 | 95 | | Plus |
| arm_X | 17196941..17197423 | 1..484 | 99 | -> | Plus |
| arm_X | 17198108..17198403 | 485..780 | 100 | -> | Plus |
