FMO01516.5prime Sequence
1239 bp (1048 high quality bases) assembled on 2008-03-21
> FMO01516.5prime
ATAATACAAAGTTATCAGTCGACATGGGCAGCGAAACGGATTTTGACGCA
AAGAATGGAATCGTGGACGGACCAACCCCGCCCCACACCGAGCTGGCGGC
CCTCTATAAGCAGAGCTTTGCCTACTACACCTTCCGTGTGCGTCTGCCTT
CGACCTTGGCCACCATCGCGGATTCCCTAGTCAAGGACAAGGACGTCCTC
CTGGCCACATATGGCGCGGCAGCGGAAGCCGATATTGAACAAACTACAAA
GGAGGTTAGACAGCTGCGGGATGACATCCTGAGCAACGGTCCTTTACTGC
CCTTTGGTGAAAATGATTCCGACTCTGAAGTGTGGAATGCATTCCTGGAA
AAACTGCCCAAGGAGAAGAGAACCTACTTTTCCGTCTGCTGGCTGTACGC
CGAGTGTTATATGTACCGCAAAATCTCATCTATTTTCCGGGCCACAGCCC
ATCTGGCCGCCTACGACTACTTCAGCCAGCAGAAACAGACGGCGACCAAA
CTGAGCGTGGACGCCATGCTGGCGGTGGCCAAGGCTACGCGGCACAATGA
ACGAAACTCGGACACCTTCCGCCAGTTGATCAAACTCAATTTGTGGGGCA
ACCGATGCGATCTGTCCATAACCTCCGGCAAACAGGTGAAGCCCACTGGC
AATGCCTTTGACCAAGTTACGGATTTGGAGGAGAAGCTACTAATCGACGG
CACCGCGGAGGTATGGAAAGCCCTGGACGGAGCCTCCGGAGAGGGCATTG
TGGACATCATTTTCGACAACGCCGGCTATGAGCTGTACACGGATCTCATT
CTGGCTGAGTACATTATCGACAGGGATTGGCTGCCAAGGTGCGCTTCAAT
CCCAAGGCCATTCCTTGGTTCATTTCGGACGTGATGGAGCACGACTTCCA
CTGGCACTTCAATTTCTGGCCGACCATCCGGATCCTGTGCTGAGTGAGTC
GGAAAAAATGCAGCGTTTGACGACCGAGGCAAGTTCGAGCTTTCGCCACT
GGACACTTTTGGACGAGTCCTACGAGTCTATCGCATGCAGAGTAAATCCC
TCACTCTACGACCGCTGAGAGGCGCCACTGGTTATCTTCAAGGTGACCCC
ACTATCGCAGGTGTTAGGCGACCTTCTCTGGACGACACGATCATCGAACT
GGCTGAAGGGCTTCGCCTTCATCTGACTTGGCCCAATTAGCGAATCTGAA
CTTCGCGAATGTGTGACAGGCGTGTCGCACACATACTAG
FMO01516.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:43
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG11474-RC | 1776 | CG11474-RC | 139..1264 | 19..1128 | 5135 | 98 | Plus |
| CG11474-RA | 1520 | CG11474-RA | 64..1189 | 19..1128 | 5135 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 22071841..22072633 | 1093..315 | 3305 | 98 | Minus |
| 2R | 25286936 | 2R | 22072961..22073067 | 219..113 | 535 | 100 | Minus |
| 2R | 25286936 | 2R | 22072798..22072895 | 315..218 | 490 | 100 | Minus |
| 2R | 25286936 | 2R | 22073211..22073305 | 113..19 | 460 | 98.9 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:42 has no hits.
FMO01516.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:25 Download gff for
FMO01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 133..1268 | 10..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:31 Download gff for
FMO01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 58..1193 | 10..1131 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:58 Download gff for
FMO01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG11474-RA | 58..1193 | 10..1131 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:58 Download gff for
FMO01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 22073212..22073309 | 14..112 | 96 | <- | Minus |
| 2R | 22071800..22072632 | 316..1131 | 97 | <- | Minus |
| 2R | 22072798..22072894 | 219..315 | 100 | <- | Minus |
| 2R | 22072962..22073067 | 113..218 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:31 Download gff for
FMO01516.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17959305..17960137 | 316..1131 | 97 | <- | Minus |
| arm_2R | 17960303..17960399 | 219..315 | 100 | <- | Minus |
| arm_2R | 17960467..17960572 | 113..218 | 100 | <- | Minus |
| arm_2R | 17960717..17960814 | 14..112 | 96 | <- | Minus |
