FMO01517.5prime Sequence
1244 bp (1034 high quality bases) assembled on 2008-03-21
> FMO01517.5prime
ATAAAACCAAGTTATCAGTCGACATGATAGCCCTACCCGACACAGATAGC
GAGGATGAGCTGCCACCCGGCTGGGAGGAACGTGCCACCGATGACGGCAC
CGTTTGCTATGTGAACCAGCAGGGAAAAACATCACAGTGGACACATCCAC
GTACGGGTCGCTCCAAACGGATCACGGGCGAATTACCCTTGGGCTGGGAG
AAGTACTACGATGAGCAGGGAAAGCGTTTCATGTTCCTCAACAAGGAGAC
GCAGCAACGAACGAATGTGGATCCTCGTTTGGCATTCGCCGTGGAGGAGC
CCACACAGAATGTGGCCCAGGTGCGCCAGCGATTTGACTCCTGTTCGACG
GCACTGCAGGTGCTGCACGGCAAGGATTTGCATGGACGCACCGCGCTGAT
AACGGGCGCAAATTGTGGCATTGGCTACGAGACGGCTCGTTCGCTCGCCC
ATCACGGCTGTGAGATCATCTTCGCCTGCCGGAACAGATCCTCCGCAGAG
GCGGCCATCGAAAGGATTGCCCAGGAGCGACCTGCAGCACGTTCCCGCTG
TCGATTCGCCGCTCTCGACTTGAGCTCTTTGCGTTCAGTTCAGCGATTTG
TGGAAGAAATTAAGCAGAGTGTTAGCCACATTGATTATCTCATCCTTAAT
GCCGGAGTATTCGCACTGCCCTACACGAGGACCGTGGATGGTCTGGAGAC
CACATTCCAGGTCTCGCACCTGTCGCATTTCTACCTCACATTGCAACTGG
AGACACTGTTTGACTACAAAACACGGATCATTGTGCTGTCATCCGAGTCG
CACAGATTTGCCAACCTGCCCGTGGAGAATCTGGCAGTGCATCACCTTTC
GCCGCCGCCGGAGAAATACTGGAGCATGATGGCCTACAACAATGCCAAGC
TATGCAATGTCTTGTTCGCCCAGGAGCTCGCCCAGCGTTGGAAGCAGCGA
GGCATTTCTGTTTTTAGCCTGCATCCGGGCAATATGGTGTCAGCGATTTG
TCACGAAACTATTGGTTCTACCGCTGCTCTTTGCCATGGTGCGTCCCTTC
ACCAAGTCGCTGCAACAAGCGCTGCCACGAATATCTATCTGTGGACGCCA
CGGCTGACGGATTGTCTGAACTGTACTTCCACATTGCTTCTCTCTGGCGA
GCCCACCAGTGTCCAATCTACTGCACAGACTGTGGAACGTGAGCAGAACC
TGATTGCCGACGTAGGGAACAGGAGCACCGCATGTGCAGTACCA
FMO01517.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:29:49
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Wwox-RB | 1440 | CG7221-RB | 94..1321 | 19..1227 | 5390 | 97 | Plus |
| Wwox-RA | 1502 | CG7221-RA | 94..1321 | 19..1227 | 5390 | 97 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:29:48
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8003525..8004034 | 625..116 | 2550 | 100 | Minus |
| 2L | 23513712 | 2L | 8003284..8003465 | 805..624 | 910 | 100 | Minus |
| 2L | 23513712 | 2L | 8000304..8000436 | 935..803 | 665 | 100 | Minus |
| 2L | 23513712 | 2L | 8000108..8000239 | 1062..933 | 545 | 97.7 | Minus |
| 2L | 23513712 | 2L | 8004097..8004193 | 115..19 | 470 | 99 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:29:49 has no hits.
FMO01517.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:27 Download gff for
FMO01517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7221-RA | 75..1230 | 19..1166 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:51:04 Download gff for
FMO01517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wwox-RA | 94..1249 | 19..1166 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:08:33 Download gff for
FMO01517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Wwox-RA | 94..1249 | 19..1166 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:08:33 Download gff for
FMO01517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8000108..8000236 | 936..1062 | 97 | <- | Minus |
| 2L | 8000304..8000433 | 806..935 | 100 | <- | Minus |
| 2L | 8003284..8003463 | 626..805 | 100 | <- | Minus |
| 2L | 8003525..8004034 | 116..625 | 100 | <- | Minus |
| 2L | 8004097..8004193 | 19..115 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:51:04 Download gff for
FMO01517.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8004097..8004193 | 19..115 | 98 | | Minus |
| arm_2L | 8000108..8000236 | 936..1062 | 97 | <- | Minus |
| arm_2L | 8000304..8000433 | 806..935 | 100 | <- | Minus |
| arm_2L | 8003284..8003463 | 626..805 | 100 | <- | Minus |
| arm_2L | 8003525..8004034 | 116..625 | 100 | <- | Minus |
