FMO01518.5prime Sequence
776 bp (776 high quality bases) assembled on 2008-03-21
> FMO01518.5prime
CAGTCGACATGCTGATTGGATTAGTACGCGACTCGGTGATGCAGTGCTTC
TGCCACACGTGCCGAGCACCTGGAATTCTGCCAGCGGTGTCAAGAAGATC
TGCGCCAATCAAGAAAAATAATAAGATTCGCTCCAAGCAGCCGCGTCTCA
GCAAGAAAGTTAAATTTATTACCACAGAGATTCGCTGCCAGGAGAAGTCC
CGCGGGGGATTGAGCTATGAGGTCATCCTGGCCGAACCGGCACCCAATGT
GGCCGTTCCAAAACGACCGGTCACCCCTGGCAAGAACGTTAGCGTCGAGG
AGATTGAGCAGAAACTTAAGGCGGCCGAGGAACGTCGCATTTCTCTAGAA
GCCAAGAAGATGGCTGACATCTCCACTAAGCTGGCTAAAGTCGAGGAGGC
GACTCGCAAAAAGGATGAGATCACCAATGAGTTTATTACTCAGACCAAGG
AGCAGCTGGAGTCGAAAATGGAGCTGCATGTGGAGAAGCGAGAGGCCATC
ATCAGTGACATGAAGGAGAAGCTAAAGATCCATGCCCAGGATATCGAAAA
GACGCGTGAGACTCTTGAGCAGCAGAAGGCCAACGAGCAGAAGGCAATCG
AGGAAAAGTTGAAGATTGCTCAGTCTCTTCGCGATGAGAATATCAAGAAA
ATGTTGGATCGCCTAAAGGAGCATGAACGTCGCGCTGAGCTCGTGCGCCA
GAACAAGGCCCAGGCCCAGGATTTGGATGGTCAGCAGAGCGCCATTGCCT
CCTCAGGCGCAAGCTTTCTAGACCAT
FMO01518.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:22
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| stai-RA | 2067 | CG31641-RA | 480..1229 | 9..758 | 3750 | 100 | Plus |
| stai-RE | 2395 | CG31641-RE | 652..1317 | 9..674 | 3330 | 100 | Plus |
| stai-RB | 2977 | CG31641-RB | 480..1145 | 9..674 | 3330 | 100 | Plus |
| stai-RE | 2395 | CG31641-RE | 1474..1557 | 675..758 | 420 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 6122005..6122190 | 342..527 | 930 | 100 | Plus |
| 2L | 23513712 | 2L | 6121774..6121943 | 172..341 | 850 | 100 | Plus |
| 2L | 23513712 | 2L | 6122260..6122411 | 524..675 | 760 | 100 | Plus |
| 2L | 23513712 | 2L | 6113029..6113113 | 87..171 | 425 | 100 | Plus |
| 2L | 23513712 | 2L | 6122978..6123061 | 675..758 | 420 | 100 | Plus |
| 2L | 23513712 | 2L | 6110146..6110224 | 9..87 | 395 | 100 | Plus |
Blast to na_te.dros performed 2014-11-28 20:40:21
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Tirant | 8526 | Tirant TIRANT 8526bp | 7724..7808 | 495..579 | 110 | 58.8 | Plus |
FMO01518.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:25:25 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:13 Download gff for
FMO01518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stai-RA | 469..1233 | 1..763 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:07 Download gff for
FMO01518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| stai-RA | 469..1233 | 1..763 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:07 Download gff for
FMO01518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 6122005..6122190 | 342..527 | 100 | -> | Plus |
| 2L | 6122264..6122410 | 528..674 | 100 | -> | Plus |
| 2L | 6122978..6123065 | 675..763 | 97 | | Plus |
| 2L | 6110135..6110224 | 1..87 | 95 | -> | Plus |
| 2L | 6113030..6113113 | 88..171 | 100 | -> | Plus |
| 2L | 6121774..6121943 | 172..341 | 100 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:13 Download gff for
FMO01518.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 6122264..6122410 | 528..674 | 100 | -> | Plus |
| arm_2L | 6122978..6123065 | 675..763 | 97 | | Plus |
| arm_2L | 6122005..6122190 | 342..527 | 100 | -> | Plus |
| arm_2L | 6110135..6110224 | 1..87 | 95 | -> | Plus |
| arm_2L | 6113030..6113113 | 88..171 | 100 | -> | Plus |
| arm_2L | 6121774..6121943 | 172..341 | 100 | -> | Plus |
