Clone FMO01522 Report

Search the DGRC for FMO01522

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:15
Well:22
Vector:pMK33-CFH-BD
Associated Gene/TranscriptPbprp2-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01522.5prime Sequence

476 bp (476 high quality bases) assembled on 2008-03-21

> FMO01522.5prime
CAGTCGACATGTCGCATCTGGTTCACCTGACCGTCCTGCTCCTAGTGGGC
ATCCTCTGCCTGGGCGCCACCAGCGCCAAGCCGCACGAGGAGATCAACAG
GGACCACGCCGCCGAGCTGGCCAACGAGTGCAAGGCTGAGACGGGAGCCA
CCGATGAGGATGTGGAGCAGCTGATGAGCCACGACCTGCCCGAGAGACAC
GAGGCCAAGTGCCTGCGCGCCTGCGTGATGAAAAAGCTGCAGATAATGGA
TGAATCCGGTAAGCTGAACAAGGAACACGCCATCGAGTTGGTCAAGGTCA
TGAGCAAGCACGATGCAGAGAAGGAAGACGCTCCCGCCGAGGTGGTGGCC
AAGTGCGAGGCCATCGAGACACCCGAGGATCATTGCGACGCTGCCTTCGC
CTACGAGGAATGCATTTACGAGCAAATGAAGGAGCATGGACTCGAGCTGG
AGGAGCACGCAAGCTTTCTAGACCAT

FMO01522.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:00:14
Subject Length Description Subject Range Query Range Score Percent Strand
Obp19d-RB 624 CG1668-RB 44..498 4..458 2260 99.8 Plus
Obp19d-RA 1101 CG1668-RA 521..975 4..458 2260 99.8 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:00:12
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 20420133..20420285 4..156 750 99.3 Plus
X 23542271 X 20420577..20420713 246..382 685 100 Plus
X 23542271 X 20420415..20420504 156..245 450 100 Plus
X 23542271 X 20420778..20420853 383..458 380 100 Plus
Blast to na_te.dros performed on 2014-11-28 19:00:12 has no hits.

FMO01522.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:18 Download gff for FMO01522.5prime
Subject Subject Range Query Range Percent Splice Strand
CG1668-RB 40..498 1..458 99   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:41:38 Download gff for FMO01522.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp19d-RA 517..975 1..458 99   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:56:28 Download gff for FMO01522.5prime
Subject Subject Range Query Range Percent Splice Strand
Obp19d-RA 517..975 1..458 99   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:56:28 Download gff for FMO01522.5prime
Subject Subject Range Query Range Percent Splice Strand
X 20420129..20420285 1..156 98 -> Plus
X 20420416..20420504 157..245 100 -> Plus
X 20420577..20420713 246..382 100 -> Plus
X 20420778..20420853 383..458 100   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:41:38 Download gff for FMO01522.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 20291156..20291312 1..156 98 -> Plus
arm_X 20291443..20291531 157..245 100 -> Plus
arm_X 20291604..20291740 246..382 100 -> Plus
arm_X 20291805..20291880 383..458 100   Plus