FMO01523.5prime Sequence
810 bp (810 high quality bases) assembled on 2008-03-21
> FMO01523.5prime
TATAAAACGAAGTTATCAGTCGACATGGTGGCCACCGGGGGACAGGCTCA
GGATCAGGGCCAGAACCAGGAGCCGGATGTGCTAAACCCCACGTCGGCGG
TGACGGGGTTGCCACAAAAGCGCTACTACCGCCAGCGTGCGCACTCGAAT
CCCATTGCGGACCACAGCTTCGACTATCCTGCTCGCCCGGAAGATGTGGA
CTGGCGCTCCATGTACCCAGGCATTCAGCAGGGCCAGCAGGTAAGTTTTG
CGGACATAGGCTGCGGCTATGGCGGCTTTCTCGTCACCCTGGGGGAGATG
TTCCCCGAGAAGCTGTCCATCGGCATGGAAATCCGCGTCAAGGTGTCGGA
CTACGTGGTGGACCGGATTGCGGCACTGCGTCGACGATGCGCGGATACGG
GTGCATACCAGAACATTGCCTGCTTACGCACCAACGCCATGAAGTATCTG
CCCAACTACTTCGTAAAGGGCCAGCTGGAGAAGATGTTCTTCCTCTACCC
GGACCCACATTTCAAGCGCGCCAAGCACAAGTGGCGTATTATCAACCAGG
CTCTACTCTCCGAATATGCCTATATCCTCAGGAAGGGGGGTCTGTTGTAC
ACCATGACGGACGTTGAGGACTTGCACAAGTGGATAGTGACACATATGGA
GGAGCATCCGCTGTACGAGCGTCTTACCGAAGAGGAGGCCAATGCTGATC
CCATCACCCCGAAGCTGTACCAAAGCAGCGAGGAGGGCGCTAAGGTGGTT
CGAAACAAGGGCGATCATTTTCTGGCCATTTTCCGGCGCCTTGCAAGCTT
TCTAGACCAT
FMO01523.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG4045-RA | 923 | CG4045-RA | 81..848 | 25..792 | 3825 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2075206..2075618 | 589..177 | 2065 | 100 | Minus |
| X | 23542271 | X | 2075669..2075820 | 176..25 | 745 | 99.3 | Minus |
| X | 23542271 | X | 2075038..2075140 | 690..588 | 515 | 100 | Minus |
| X | 23542271 | X | 2074870..2074971 | 792..691 | 510 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:31 has no hits.
FMO01523.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:19 Download gff for
FMO01523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4045-RA | 36..812 | 13..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:50 Download gff for
FMO01523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4045-RA | 72..848 | 13..792 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:35:07 Download gff for
FMO01523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4045-RA | 72..848 | 13..792 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:35:07 Download gff for
FMO01523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2075669..2075828 | 13..176 | 96 | | Minus |
| X | 2074870..2074971 | 691..792 | 100 | <- | Minus |
| X | 2075038..2075139 | 589..690 | 100 | <- | Minus |
| X | 2075207..2075618 | 177..588 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:50 Download gff for
FMO01523.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1968903..1969004 | 691..792 | 100 | <- | Minus |
| arm_X | 1969071..1969172 | 589..690 | 100 | <- | Minus |
| arm_X | 1969240..1969651 | 177..588 | 100 | <- | Minus |
| arm_X | 1969702..1969861 | 13..176 | 96 | | Minus |
