FMO01529.5prime Sequence
1230 bp (996 high quality bases) assembled on 2008-03-21
> FMO01529.5prime
CAGTCGACATGTATAAGTTGCTGGGTAGCCTGAAGAGCTACCTCAAGTGG
CAGGACATCCAGACGGACAACGCCGTCTTCCGGCTGCACAACTCCTTTAC
CACGGTGCTCCTGCTAACCTGCAGCCTGATCATCACCGCCACCCAGTACG
TGGGCCAGCCGATTAGCTGCATCGTCAATGGCGTACCGCCGCACGTGGTC
AACACGTTCTGCTGGATCCACAGCACTTTCACCATGCCGGACGCTTTTCG
CAGACAGGTTGGCCGAGAGGTGGCTCATCCCGGTGTGGCCAATGATTTTG
GCGACGAGGATGCCAAGAAGTACTACACCTACTACCAGTGGGTGTGCTTC
GTGCTTTTCTTCCAGGCCATGGCCTGTTATACGCCCAAATTCCTGTGGAA
TAAATTCGAGGGCGGACTGATGCGCATGATTGTGATGGGTCTGAATATCA
CGATCTGCACCCGCGAGGAGAAGGAGGCCAAACGCGATGCCCTGCTGGAC
TATCTGATCAAGCACGTGAAGCGCCACAAGCTGTACGCCATTCGGTACTG
GGCCTGCGAATTTCTCTGCTGCATCAACATTATCGTGCAGATGTATCTGA
TGAATCGCTTTTTCGATGGCGAGTTCCTCTCGTACGGTACGAATATCATG
AAGCTTTCGGATGTGCCGCAGAGCAAAGGGTGGATCCCATGGTCTATGTG
TTCCCCCGGGTGACCAAGTGCACCTTCCACAAGTATGGTCCCTCTGGTTC
GCTGCAGAAGCACGACTCACTCTGCATCCTGCCGCTGAACATTGTGAACG
AAAAAGACGTACGTGTTCATCTGGTTCTGGTTCTGGATCCTGCTCGTCCT
GCTCATCGGACTGAAAGTGTTCCGTGGCTGCATTATCTTTATGCCGAAAT
TCCGACCCCCGCCTCCTGAACGCCAGCATCGCATGATTCCGATGGAGATC
TTGTCGCTCGCTGTCCCGCAAACTGACATCGGTGACTGTGCTAATCTATA
ATGCTGGGTCGCAATCTTGATCCGTCATCTAACAAGACGTGATGAGCGAG
TTTGCAAGCAGTGGAGCCTCCAAGCACGACCGGTGCCAAGCAGCTTTCAG
ACATTCGTTTGGGCCGCGGGCCCAGTATGGTCTAACTAATCCATAATCAT
ATTCAATCACTAGCTAGGAATTCTGGCTAGCTATGCTGGCATTCCCACCA
ATAAACGCCCGCGGCCAACAGAGGTCTTGT
FMO01529.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:52
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
ogre-RF | 3068 | CG3039-RF | 1584..2669 | 9..1090 | 5030 | 98.4 | Plus |
ogre-RE | 1689 | CG3039-RE | 205..1290 | 9..1090 | 5030 | 98.4 | Plus |
ogre-RD | 2794 | CG3039-RD | 1310..2395 | 9..1090 | 5030 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:50
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
X | 23542271 | X | 6974731..6975085 | 874..520 | 1650 | 98.9 | Minus |
X | 23542271 | X | 6977157..6977407 | 259..9 | 1255 | 100 | Minus |
X | 23542271 | X | 6975151..6975308 | 521..364 | 790 | 100 | Minus |
X | 23542271 | X | 6976022..6976133 | 366..255 | 560 | 100 | Minus |
X | 23542271 | X | 6974470..6974653 | 1055..874 | 510 | 93.6 | Minus |
X | 23542271 | X | 6999437..6999490 | 317..370 | 195 | 90.7 | Plus |
X | 23542271 | X | 6999830..6999953 | 709..833 | 185 | 78.4 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:51 has no hits.
FMO01529.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:38 Download gff for
FMO01529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG3039-RB | 318..1406 | 9..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:24 Download gff for
FMO01529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ogre-RD | 1310..2398 | 9..1093 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:26 Download gff for
FMO01529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
ogre-RD | 1310..2398 | 9..1093 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:26 Download gff for
FMO01529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
X | 6977159..6977407 | 9..257 | 100 | | Minus |
X | 6974430..6974652 | 875..1093 | 93 | <- | Minus |
X | 6974731..6975083 | 522..874 | 98 | <- | Minus |
X | 6975151..6975306 | 366..521 | 100 | <- | Minus |
X | 6976023..6976130 | 258..365 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:24 Download gff for
FMO01529.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_X | 6868463..6868685 | 875..1093 | 93 | <- | Minus |
arm_X | 6868764..6869116 | 522..874 | 98 | <- | Minus |
arm_X | 6869184..6869339 | 366..521 | 100 | <- | Minus |
arm_X | 6870056..6870163 | 258..365 | 100 | <- | Minus |
arm_X | 6871192..6871440 | 9..257 | 100 | | Minus |