Clone FMO01529 Report

Search the DGRC for FMO01529

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:15
Well:29
Vector:pMK33-CFH-BD
Associated Gene/Transcriptogre-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01529.5prime Sequence

1230 bp (996 high quality bases) assembled on 2008-03-21

> FMO01529.5prime
CAGTCGACATGTATAAGTTGCTGGGTAGCCTGAAGAGCTACCTCAAGTGG
CAGGACATCCAGACGGACAACGCCGTCTTCCGGCTGCACAACTCCTTTAC
CACGGTGCTCCTGCTAACCTGCAGCCTGATCATCACCGCCACCCAGTACG
TGGGCCAGCCGATTAGCTGCATCGTCAATGGCGTACCGCCGCACGTGGTC
AACACGTTCTGCTGGATCCACAGCACTTTCACCATGCCGGACGCTTTTCG
CAGACAGGTTGGCCGAGAGGTGGCTCATCCCGGTGTGGCCAATGATTTTG
GCGACGAGGATGCCAAGAAGTACTACACCTACTACCAGTGGGTGTGCTTC
GTGCTTTTCTTCCAGGCCATGGCCTGTTATACGCCCAAATTCCTGTGGAA
TAAATTCGAGGGCGGACTGATGCGCATGATTGTGATGGGTCTGAATATCA
CGATCTGCACCCGCGAGGAGAAGGAGGCCAAACGCGATGCCCTGCTGGAC
TATCTGATCAAGCACGTGAAGCGCCACAAGCTGTACGCCATTCGGTACTG
GGCCTGCGAATTTCTCTGCTGCATCAACATTATCGTGCAGATGTATCTGA
TGAATCGCTTTTTCGATGGCGAGTTCCTCTCGTACGGTACGAATATCATG
AAGCTTTCGGATGTGCCGCAGAGCAAAGGGTGGATCCCATGGTCTATGTG
TTCCCCCGGGTGACCAAGTGCACCTTCCACAAGTATGGTCCCTCTGGTTC
GCTGCAGAAGCACGACTCACTCTGCATCCTGCCGCTGAACATTGTGAACG
AAAAAGACGTACGTGTTCATCTGGTTCTGGTTCTGGATCCTGCTCGTCCT
GCTCATCGGACTGAAAGTGTTCCGTGGCTGCATTATCTTTATGCCGAAAT
TCCGACCCCCGCCTCCTGAACGCCAGCATCGCATGATTCCGATGGAGATC
TTGTCGCTCGCTGTCCCGCAAACTGACATCGGTGACTGTGCTAATCTATA
ATGCTGGGTCGCAATCTTGATCCGTCATCTAACAAGACGTGATGAGCGAG
TTTGCAAGCAGTGGAGCCTCCAAGCACGACCGGTGCCAAGCAGCTTTCAG
ACATTCGTTTGGGCCGCGGGCCCAGTATGGTCTAACTAATCCATAATCAT
ATTCAATCACTAGCTAGGAATTCTGGCTAGCTATGCTGGCATTCCCACCA
ATAAACGCCCGCGGCCAACAGAGGTCTTGT

FMO01529.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:52
Subject Length Description Subject Range Query Range Score Percent Strand
ogre-RF 3068 CG3039-RF 1584..2669 9..1090 5030 98.4 Plus
ogre-RE 1689 CG3039-RE 205..1290 9..1090 5030 98.4 Plus
ogre-RD 2794 CG3039-RD 1310..2395 9..1090 5030 98.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:50
Subject Length Description Subject Range Query Range Score Percent Strand
X 23542271 X 6974731..6975085 874..520 1650 98.9 Minus
X 23542271 X 6977157..6977407 259..9 1255 100 Minus
X 23542271 X 6975151..6975308 521..364 790 100 Minus
X 23542271 X 6976022..6976133 366..255 560 100 Minus
X 23542271 X 6974470..6974653 1055..874 510 93.6 Minus
X 23542271 X 6999437..6999490 317..370 195 90.7 Plus
X 23542271 X 6999830..6999953 709..833 185 78.4 Plus
Blast to na_te.dros performed on 2014-11-28 20:40:51 has no hits.

FMO01529.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:38 Download gff for FMO01529.5prime
Subject Subject Range Query Range Percent Splice Strand
CG3039-RB 318..1406 9..1093 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:24 Download gff for FMO01529.5prime
Subject Subject Range Query Range Percent Splice Strand
ogre-RD 1310..2398 9..1093 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:26 Download gff for FMO01529.5prime
Subject Subject Range Query Range Percent Splice Strand
ogre-RD 1310..2398 9..1093 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:26 Download gff for FMO01529.5prime
Subject Subject Range Query Range Percent Splice Strand
X 6977159..6977407 9..257 100   Minus
X 6974430..6974652 875..1093 93 <- Minus
X 6974731..6975083 522..874 98 <- Minus
X 6975151..6975306 366..521 100 <- Minus
X 6976023..6976130 258..365 100 <- Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:24 Download gff for FMO01529.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_X 6868463..6868685 875..1093 93 <- Minus
arm_X 6868764..6869116 522..874 98 <- Minus
arm_X 6869184..6869339 366..521 100 <- Minus
arm_X 6870056..6870163 258..365 100 <- Minus
arm_X 6871192..6871440 9..257 100   Minus