Clone FMO01531 Report

Search the DGRC for FMO01531

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:15
Well:31
Vector:pMK33-CFH-BD
Associated Gene/Transcriptspn-F-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01531.5prime Sequence

1204 bp (1003 high quality bases) assembled on 2008-03-21

> FMO01531.5prime
CAGTCGACATGGAGGCATCTGCTGCCAAAATCACGCCTATGGCCAGTTCC
ATGTCCGCTTCCGGATCCACAAACTCCCCCTCCAGTGAAAAAATGAACTA
CGCACTGCAAGTGGCGCTGCAGACGATCAAGGAGCGGTGCATCCAGCTGC
AGCGCCGCGTGGCCAGCATGGAGGAGGAGAACCAGCAGCTAAGGGAGGCC
TCCAGCAGGTCGGAAGGTGCTCCAAGGGCAAACGAAATCGGGGTCACTGG
GGACGTCCTCTCTCTGAAAGCACAGGTCTCTGAGCTGCAGCGCCAAAAGG
AGCAGCTGGAGGAGCACATTGGCATGGTATCCAACGAGAACAGACGGCTC
TGGTCCCGCCTATCGCAGATCTCCAAGGATCAGCAGCTGAACGCACTGCC
CAGCTCAACAGACTCGCGAGCCCAGCAAAACCAGAACCTGGTGCGCTCCA
AGACCTTTACGCAGCACTCCCCCAATCCTCACCTTCGCCAAAAGATGCTC
TCCGACGGCATTAAGGATCTCAGTCTGGAGGAAATAGCCCTGGATGACTT
CGGTGCCAGCAGTGAGGAACTAGGTTACCCCTACAACCTGCAAAAGGTGG
AGGAAACCACTAGTGAACCAGATGCCAATGTGGATGCCAAAAGATGTTTG
GATGGACTGCAGGAGCTGAGGCGAGAGGCCATGAAGCAGCAGCAGGAGCT
CAGATCGGTAATGACTCTGCTAGAAAATCGCATAGCACTCAAGCCCTGTC
CGGAATGTGCCCAGAAAACCATCAAAAAACCGGAGATGGCCGACAAAAGT
CTGGAAACGGACGACAGCCTGACCAGCGAGCTGAAGAACTATGAGAGCCA
ACACAATGGACACAATGGCACGCCGCCCAGCCAGAGAATTAACATAATAC
AGAGAAATCAAAGCAGATGCAGCGACGCAATGGAGAGACCTGCCCTATGT
GCGGCAAGCAGTACTCAGCAGTGTCTCATGCGTTCGGGGAGCACGTCGAG
ATGCACTCATCGACGATGCACTGGACTGGGAGTCGGAGAAAGCATGACGC
AGTTTGGAGTCGTTTCCCATGCTGTGGGGTGACTCCCAGCTTCTAGAACA
TTCGTGGGCGCGCGGGCCAGGTAAGGGACAATCTATCGATCCTAGCTATC
CACTAGCTAGGAATTCTGGCCTGGACCTGGCGTGTGATTCTCTTCACCAC
ATAG

FMO01531.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:32
Subject Length Description Subject Range Query Range Score Percent Strand
spn-F-RB 1465 CG12114-RB 117..1206 9..1084 4955 98 Plus
spn-F-RA 1465 CG12114-RA 117..1206 9..1084 4955 98 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:30
Subject Length Description Subject Range Query Range Score Percent Strand
3R 32079331 3R 31255243..31255969 9..735 3635 100 Plus
3R 32079331 3R 31256036..31256353 734..1040 1045 93.7 Plus
Blast to na_te.dros performed on 2014-11-28 22:32:31 has no hits.

FMO01531.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:39 Download gff for FMO01531.5prime
Subject Subject Range Query Range Percent Splice Strand
CG12114-RA 95..1191 1..1084 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:41 Download gff for FMO01531.5prime
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 110..1206 1..1084 97   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:14 Download gff for FMO01531.5prime
Subject Subject Range Query Range Percent Splice Strand
spn-F-RA 110..1206 1..1084 97   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:14 Download gff for FMO01531.5prime
Subject Subject Range Query Range Percent Splice Strand
3R 31255236..31255969 1..735 99 -> Plus
3R 31256038..31256400 736..1084 93 == Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:41 Download gff for FMO01531.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3R 27080958..27081691 1..735 99 -> Plus
arm_3R 27081760..27082122 736..1084 93 == Plus