FMO01531.5prime Sequence
1204 bp (1003 high quality bases) assembled on 2008-03-21
> FMO01531.5prime
CAGTCGACATGGAGGCATCTGCTGCCAAAATCACGCCTATGGCCAGTTCC
ATGTCCGCTTCCGGATCCACAAACTCCCCCTCCAGTGAAAAAATGAACTA
CGCACTGCAAGTGGCGCTGCAGACGATCAAGGAGCGGTGCATCCAGCTGC
AGCGCCGCGTGGCCAGCATGGAGGAGGAGAACCAGCAGCTAAGGGAGGCC
TCCAGCAGGTCGGAAGGTGCTCCAAGGGCAAACGAAATCGGGGTCACTGG
GGACGTCCTCTCTCTGAAAGCACAGGTCTCTGAGCTGCAGCGCCAAAAGG
AGCAGCTGGAGGAGCACATTGGCATGGTATCCAACGAGAACAGACGGCTC
TGGTCCCGCCTATCGCAGATCTCCAAGGATCAGCAGCTGAACGCACTGCC
CAGCTCAACAGACTCGCGAGCCCAGCAAAACCAGAACCTGGTGCGCTCCA
AGACCTTTACGCAGCACTCCCCCAATCCTCACCTTCGCCAAAAGATGCTC
TCCGACGGCATTAAGGATCTCAGTCTGGAGGAAATAGCCCTGGATGACTT
CGGTGCCAGCAGTGAGGAACTAGGTTACCCCTACAACCTGCAAAAGGTGG
AGGAAACCACTAGTGAACCAGATGCCAATGTGGATGCCAAAAGATGTTTG
GATGGACTGCAGGAGCTGAGGCGAGAGGCCATGAAGCAGCAGCAGGAGCT
CAGATCGGTAATGACTCTGCTAGAAAATCGCATAGCACTCAAGCCCTGTC
CGGAATGTGCCCAGAAAACCATCAAAAAACCGGAGATGGCCGACAAAAGT
CTGGAAACGGACGACAGCCTGACCAGCGAGCTGAAGAACTATGAGAGCCA
ACACAATGGACACAATGGCACGCCGCCCAGCCAGAGAATTAACATAATAC
AGAGAAATCAAAGCAGATGCAGCGACGCAATGGAGAGACCTGCCCTATGT
GCGGCAAGCAGTACTCAGCAGTGTCTCATGCGTTCGGGGAGCACGTCGAG
ATGCACTCATCGACGATGCACTGGACTGGGAGTCGGAGAAAGCATGACGC
AGTTTGGAGTCGTTTCCCATGCTGTGGGGTGACTCCCAGCTTCTAGAACA
TTCGTGGGCGCGCGGGCCAGGTAAGGGACAATCTATCGATCCTAGCTATC
CACTAGCTAGGAATTCTGGCCTGGACCTGGCGTGTGATTCTCTTCACCAC
ATAG
FMO01531.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:32
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
spn-F-RB | 1465 | CG12114-RB | 117..1206 | 9..1084 | 4955 | 98 | Plus |
spn-F-RA | 1465 | CG12114-RA | 117..1206 | 9..1084 | 4955 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:30
Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
3R | 32079331 | 3R | 31255243..31255969 | 9..735 | 3635 | 100 | Plus |
3R | 32079331 | 3R | 31256036..31256353 | 734..1040 | 1045 | 93.7 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:32:31 has no hits.
FMO01531.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:39 Download gff for
FMO01531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
CG12114-RA | 95..1191 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:06:41 Download gff for
FMO01531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 110..1206 | 1..1084 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:02:14 Download gff for
FMO01531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
spn-F-RA | 110..1206 | 1..1084 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:02:14 Download gff for
FMO01531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
3R | 31255236..31255969 | 1..735 | 99 | -> | Plus |
3R | 31256038..31256400 | 736..1084 | 93 | == | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:06:41 Download gff for
FMO01531.5prime
Subject | Subject Range | Query Range | Percent | Splice | Strand |
arm_3R | 27080958..27081691 | 1..735 | 99 | -> | Plus |
arm_3R | 27081760..27082122 | 736..1084 | 93 | == | Plus |