FMO01532.5prime Sequence
929 bp (929 high quality bases) assembled on 2008-03-21
> FMO01532.5prime
CAGTCGACATGGGCGACGTGATGAATATCGACAGCATAATATCGCGACTT
CTCGAGGTGCGTGGGGCACGGCCAGGTAAAAACGTACAGCTCTCGGAGGG
CGAGATCCGGGGACTTTGCTTGAAGTCGCGCGAGATCTTCCTGTCGCAGC
CCATTCTGCTCGAGCTAGAGGCACCGTTGAAGATCTGCGGCGACATCCAT
GGACAGTACTACGATCTGTTGCGTCTGTTCGAGTACGGCGGCTTTCCGCC
GGAATCGAATTACCTGTTCCTCGGCGACTACGTCGATCGCGGCAAGCAAT
CGCTGGAGACGATCTGCCTGCTGCTCGCCTACAAGATCAAATACTCGGAG
AATTTCTTCCTGCTGCGCGGCAACCACGAATGCGCCAGCATTAATCGCAT
ATACGGATTCTACGACGAATGCAAGCGTCGCTACAGCATCAAGTTGTGGA
AGACATTCACGGACTGCTTCAACTGCCTGCCAGTGGCGGCCATTGTCGAC
GAGAAGATCTTCTGCTGCCACGGTGGTCTCAGTCCCGATTTGACCTCCAT
GGAGCAGATCCGTCGCATTATGCGGCCAACCGATGTGCCCGACCAGGGAC
TGCTGTGCGATCTCCTGTGGTCCGATCCCGATAAGGATACCATGGGCTGG
GGCGAAAACGACCGCGGCGTTAGCTTCACCTTCGGTGCCGAGGTGGTGGC
CAAGTTTTTGCAGAAGCACGAGTTCGATCTCATCTGCCGAGCCCATCAAG
TCGTCGAGGATGGGTACGAGTTCTTTGCCAAACGCATGCTGGTCACCCTG
TTCTCGGCGCCCAACTACTGCGGCGAGTTCGACAATGCCGGCGCCATGAT
GTCCGTGACGATACGCTGATGTGCTCGTTCCAAATCCTCAAGCCAGCCGA
CAGCGTAAAAGGCAAGCTTTCTAGACCAT
FMO01532.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:48:46
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Pp1-87B-RA | 2203 | CG5650-RA | 228..1133 | 7..910 | 4480 | 99.8 | Plus |
| Pp1alpha-96A-RB | 3210 | CG6593-RB | 402..1284 | 21..902 | 2365 | 84.7 | Plus |
| Pp1alpha-96A-RA | 2221 | CG6593-RA | 402..1284 | 21..902 | 2365 | 84.7 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:48:44
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 12424794..12425690 | 902..7 | 4435 | 99.9 | Minus |
| X | 23542271 | X | 15359451..15360313 | 894..33 | 2165 | 83.7 | Minus |
| 3R | 32079331 | 3R | 24518843..24519192 | 57..406 | 1000 | 85.7 | Plus |
| 3R | 32079331 | 3R | 24519597..24519885 | 408..696 | 890 | 87.2 | Plus |
| X | 23542271 | X | 10406418..10406701 | 123..406 | 775 | 84.9 | Plus |
| X | 23542271 | X | 10406764..10407104 | 408..748 | 595 | 78.3 | Plus |
| 2R | 25286936 | 2R | 21881560..21882040 | 852..372 | 470 | 73.2 | Minus |
| 3R | 32079331 | 3R | 24519938..24520082 | 691..835 | 320 | 81.4 | Plus |
| X | 23542271 | X | 10407172..10407299 | 756..882 | 290 | 83.6 | Plus |
| X | 23542271 | X | 16567440..16567565 | 293..168 | 195 | 77 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:48:45 has no hits.
FMO01532.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:41 Download gff for
FMO01532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5650-RA | 221..1138 | 1..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 01:05:33 Download gff for
FMO01532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1-87B-RA | 221..1138 | 1..915 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:40:59 Download gff for
FMO01532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Pp1-87B-RA | 221..1138 | 1..915 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:40:59 Download gff for
FMO01532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 12424780..12425693 | 1..915 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 01:05:33 Download gff for
FMO01532.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 8250502..8251415 | 1..915 | 99 | | Minus |
