FMO01534.5prime Sequence
815 bp (815 high quality bases) assembled on 2008-03-21
> FMO01534.5prime
CAGTCGACATGGCCGACAATAATTCAGCATCAGAGAGCGAAAATATAATT
CCTGTCTTTCTAAGTAATTTCGATGAAAAGGAGCAGGTGCGTCAACTCAG
CTTATACCTTCACAACCTGCAAGACCGTTTGCGGCAGGGCATTCAGGAGC
ACCAGAAGGTAATGCAGTCGTCGGTGCAGTTGCTCAAGGAGGTGGGCGAT
GTGAACGACATGATGCAGCTCGCGAGGTGTGGCCACCGCGCCGGGGCCTC
CAAGATACAGCGACTGATCGTGGGTTTCGAGACGGTTAATGCTGTGAACG
CCCCGCAAACCTCCGCCGTGGCGGGCATGAGTTTGCCTTCTGACCTCACC
GAGATTCAAGGTCTATTGGTGGAATTTGAGCACCTCAATGAAAGCCAAGT
TCTGCGGGAGAGCCAGGAGAACTTCAAACGTGCCCGAGACTCACTGGAGA
AGGTTCTCGGCTTTCTAGAGAAGATTGGCAGCGAATCTTCACGGCCGTCT
CCACAAGGAAGTCAGCTCTTTGGGTGTCCCAGTGCCAGCCGCAGCCTGCG
CGAGAAGATCGAAGCATTCAACAAGGTCTTAGAGGCGGCCCCCGAGAAAC
TTGGGGATACCTGCCGTCATTTTAAGGAGTGCTTTTGTAGCTGCTGCACC
TTGGACGAGTCCTTCCTGTCTAAAGGGCACAATCCCCTTCCCGTTGCCTC
GAAAACAAATTCGGGCTACGAGGGGGACATAGACAGCGAGGTAGAGCAGC
CGGAGCGGTCCAATAACGAATCGGGGGCGGATATAAGGGCCGATCGGGCA
AGCTTTCTAGACCAT
FMO01534.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:40:34
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1971-RA | 1145 | CG1971-RA | 127..915 | 9..797 | 3945 | 100 | Plus |
| CG1971-RB | 1106 | CG1971-RB | 103..846 | 54..797 | 3720 | 100 | Plus |
| CG1971-RC | 1034 | CG1971-RC | 54..774 | 77..797 | 3605 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:40:32
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 31805766..31806509 | 54..797 | 3720 | 100 | Plus |
| 3R | 32079331 | 3R | 31805594..31805639 | 9..54 | 230 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:40:33 has no hits.
FMO01534.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:31 Download gff for
FMO01534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1971-RA | 127..918 | 9..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:39:18 Download gff for
FMO01534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1971-RA | 127..918 | 9..801 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:11:14 Download gff for
FMO01534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1971-RA | 127..918 | 9..801 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 21:11:14 Download gff for
FMO01534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 31805594..31805639 | 9..54 | 100 | -> | Plus |
| 3R | 31805767..31806512 | 55..801 | 99 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:39:18 Download gff for
FMO01534.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 27631316..27631361 | 9..54 | 100 | -> | Plus |
| arm_3R | 27631489..27632234 | 55..801 | 99 | | Plus |
