FMO01536.5prime Sequence
1213 bp (1040 high quality bases) assembled on 2008-03-21
> FMO01536.5prime
ATAATACGAAGTTATCAGTCGACATGTTTTCGCACAAGTTTATTTGCGGG
TCCTTGACCAAAATGACTGAAACCGGCATTACATTCGATCCGCCGGTGTA
CGAGCAGCGATATTGCGCCACAATCCAAATTCTGGAGGACGCCCGCTGGA
AGGATCAGATTAAGAAGGTCGTGGAGTTCGGTTGTGCCGAGATGCGCTTC
TTCCAGCTAATGCGTCGCATTGAGACCATAGAACATATTGGACTGGTGGA
CATCGACAAGTCCTTGCTCATGAGAAACTTAACCAGCGTTAATCCACTGG
TTTCCGATTATATACGGAGTCGCGCGAGTCCTCTAAAAGTTCAAATTCTG
CAGGGGAATGTGGCTGATTCTTCGGAAGAATTGAGGGACACTGACGCTGT
AATCGCAATTGAACTAATCGAGCACGTTTACGACGATGTATTGGCCAAAA
TTCCAGTCAACATTTTTGGTTTCATGCAGCCGAAATTGGTAGTCTTCAGC
ACACCAAACTCGGACTTCAACGTTATATTTACGCGGTTCAATCCGCTGTT
GCCAAATGGTTTTCGCCACGAGGATCACAAGTTCGAGTGGTCACGCGATG
AGTTCAAGAACTGGTGTTTGGGCATTGTGGAGAAGTACCCGAATTATATG
TTTTCCCTAACGGGAGTGGGTAATCCGCCTAAGGAATACGAGTCGGTGGG
CCCCGTTTCACAGATAGCCATATTCGTTCGCAAGGATATGCTGGAGATGC
AGTTGGTTAACCCGTTGGTTAGCAAACCCAATATCGATAAGGAATCAATT
CCCTACAAGCTAATTCATACCGTGGAATATCCTTTTTATGTGGATACGCG
CACCGAGAAAGAAAAGCTCTGGACCGAAGTGCAAATAGAGCTTCAGCGTT
TCAAAAGACATTCGAATCCTCCGAGATTGAGGAGGGTACTTATCAGGACA
CTTGTATATGCCTATTGCTTTCTTATTGATCGCCTAGAACACGTGGTGCC
ACAAAGAACGTATCGAGACTCTACTGGAAATACCTAACAGTAGAGACGAG
TGGTGTTTTAATAGTAGTTCCGATCAGGAATCGGAATGCTGATTCTTACA
AGTTTTCTGATCGTTCCTCCAGGATGTATGCTTTGGTCGAACAGGACAAG
AGAGAGGAACGCTTGGGATCAAGGCCGGATTCACATCGCCTTCCTTGAGA
CCAATCGCTGTTT
FMO01536.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:32:47
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Hen1-RA | 1573 | CG12367-RA | 51..1215 | 24..1176 | 5320 | 98 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:32:45
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 12151622..12152394 | 416..1176 | 2950 | 95.1 | Plus |
| 2R | 25286936 | 2R | 12145760..12145983 | 24..247 | 1120 | 100 | Plus |
| 2R | 25286936 | 2R | 12151362..12151532 | 245..415 | 855 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:32:46 has no hits.
FMO01536.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:32 Download gff for
FMO01536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG12367-RA | 35..1207 | 24..1183 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:38 Download gff for
FMO01536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hen1-RA | 51..1223 | 24..1183 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:30 Download gff for
FMO01536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Hen1-RA | 51..1223 | 24..1183 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:30 Download gff for
FMO01536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 12145760..12145981 | 24..245 | 100 | -> | Plus |
| 2R | 12151363..12151532 | 246..415 | 100 | -> | Plus |
| 2R | 12151622..12152402 | 416..1183 | 96 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:38 Download gff for
FMO01536.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 8033265..8033486 | 24..245 | 100 | -> | Plus |
| arm_2R | 8038868..8039037 | 246..415 | 100 | -> | Plus |
| arm_2R | 8039127..8039907 | 416..1183 | 96 | | Plus |
