FMO01540.5prime Sequence
800 bp (800 high quality bases) assembled on 2008-03-21
> FMO01540.5prime
CAGTCGACATGAAGAAGTTTCTCGTGGTGTTTGTGGCATTATTCGGAGCC
GCTGTGGCCCAAAGTAGCTTTAAGTGTCCCGATGACTTTGGATTCTATCC
ACATGACACGTCCTGCGACAAGTACTGGAAGTGCGACAACGGCGTTTCCG
AGCTGAAGACCTGTGGAAACGGTCTGGCTTTCGATGCCACAGACTCCAAG
TACCTAACCGAAAACTGCGACTATCTACACAACGTGGATTGCGGCGATCG
CACAGAGCTGGAGCCCCCAATTACCACCCCCCACTGCTCTCGCCTGTACG
GCATCTTCCCCGATGAGAACAAGTGCGACGTGTTCTGGAACTGCTGGAAC
GGCGAGCCCTCCAGATACCAGTGCTCCCCCGGATTGGCTTACGATCGCGA
TGCTCGCGTGTGCATGTGGGCTGACCAGGTGCCTGAGTGCAAGAACGAAG
AGGTGGCCAACGGATTCTCTTGCCCGGCGGCTGGTGAGCTGGCCAACGCC
GGATCCTTCTCGCGCCACGCCCATCCCGAGGACTGCCGCAAGTACTACAT
CTGCCTGGAGGGTGTGGCACGCGAGTACGGATGCCCCATCGGCACAGTGT
TCAAGATTGGCGACAGTGATGGCACTGGCAACTGCGAGGATCCCGAGGAT
GTTCCCGGGTGTGAGGACTACTACGGCGATCTGGATTTGAAGAGCATCCG
CAAGAGCGAACTTCTAGCTGGACTGAACAGTGAAGGTCGCACTAAGGGCG
CGCCAAAAACCAAAGCTGCCTCCTCCTCCTCAGCAAGCTTTCTAGACCAT
FMO01540.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:20
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Gasp-RA | 1460 | CG10287-RA | 136..909 | 9..782 | 3870 | 100 | Plus |
| Gasp-RB | 1683 | CG10287-RB | 136..807 | 9..680 | 3315 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 6094227..6094439 | 661..449 | 1065 | 100 | Minus |
| 3R | 32079331 | 3R | 6094811..6095021 | 261..51 | 1055 | 100 | Minus |
| 3R | 32079331 | 3R | 6094504..6094693 | 450..261 | 950 | 100 | Minus |
| 3R | 32079331 | 3R | 6093554..6093675 | 782..661 | 610 | 100 | Minus |
| 3R | 32079331 | 3R | 6100710..6100752 | 51..9 | 215 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:19 has no hits.
FMO01540.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:49 Download gff for
FMO01540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10287-RA | 126..912 | 1..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:48 Download gff for
FMO01540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gasp-RA | 126..912 | 1..786 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:52 Download gff for
FMO01540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Gasp-RA | 126..912 | 1..786 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:52 Download gff for
FMO01540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 6094227..6094437 | 451..661 | 100 | <- | Minus |
| 3R | 6094504..6094692 | 262..450 | 100 | <- | Minus |
| 3R | 6094811..6095020 | 52..261 | 100 | <- | Minus |
| 3R | 6100710..6100758 | 1..51 | 92 | | Minus |
| 3R | 6093550..6093674 | 662..786 | 98 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:48 Download gff for
FMO01540.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 1919272..1919396 | 662..786 | 98 | <- | Minus |
| arm_3R | 1919949..1920159 | 451..661 | 100 | <- | Minus |
| arm_3R | 1920226..1920414 | 262..450 | 100 | <- | Minus |
| arm_3R | 1920533..1920742 | 52..261 | 100 | <- | Minus |
| arm_3R | 1926432..1926480 | 1..51 | 92 | | Minus |
