FMO01541.5prime Sequence
1221 bp (1022 high quality bases) assembled on 2008-03-21
> FMO01541.5prime
CAGTCGACATGCTGTTCAATCGATTTGTACTGGCCATCAAGAACCAGTCC
CGAGAAACGCTGCGTGCCTGGAGCTACCAATGCGAGTCGATTTTCGCCCA
GCGCTCGCGTCGCGTTCAGCAGTTGTTCAGTTTCTACCAGTCGGTGTATG
GAACTCAGGGTCTGAAGCAGCTATGGCGCGCCTACTACCGCCGGGAGCTG
CAGCCTCCGCTGCGGGGAATGGTGATGAGTGCAGTGGGTCTCGTCGGGCT
GAATATCAAGCGAATGGGTAGCGATGGCTTCGATTGGAACAAGGAGCGCC
TGGCCTTGTCCAACTTTGATCTGTGCCGCCGGGATATTGAGTTTATCAAC
GCCCTGCCCAACAATCAGCTGTGCGACCGCTGCCAGGCCAAGAAGATGAA
ATACTGCTACTGTCAGCTGGGCAACCAGCGCTGCAAAAAGGGCCAATCCC
AGCCGTCCACCAGCAAAGAGGCGGAGACGGATCCGGACACCAGCATCAGC
AATTGTCTGCGACCGTTGGATCTGGACGTGCGCAATGCACCGGCCGGAAC
GGTACGCATTCAGGCCCAGGACGACCAAAAATGGGAGCCGTACTTTAGCA
AAAACGAATTCAGCATTTGGCGGCGGCAGGAGCGCTCCTCCTTATACTCA
TACAAGGTTTATGCTCGATTCGACGACATCACAGCGGACGACTTCCTCCA
CGTTCAAACGGATTTGGATTACCGTCGCCAGTGGGACGACACGGCCCTAA
GACTTGAGCTCATCAGCGAGGATCCCGTCCCGGGCAGCAACTCGCATCTG
ATATACTGGGAGATGCAGTGGCCACGACTGTTCGCCATCGCGACTACGTC
TATTGTCGCCGCTACATAAAAGACGACAACAGAAGCTGATATTCATTTGC
AACCGCGGAGCCACGCACAACACCTATCCGGCGTTGTCTGGAAAAGTTCG
CGTCACTGACTATGAGCCTGATGGTCATCAGCCCTTTCGCGTTCATGAGC
CAGGCCTCCACTTTGTCTCACGTACTTCGACGATCCGGCATACCCATACC
GCAAATATTAGGTCCTGGTACCTCAAAACAATGCCCGAGTTCCTCACAGA
ATGTACGTGCCACAAGAACTACGCCCTGCTCTACGGCATTCAAGAGTAAG
AATGTTACGAATTCCGCTTATCAAGAGCAAAACGGCTATAGGAACACACC
GCACGATGTGTTGTGTGGTGC
FMO01541.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:33:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6565-RC | 2169 | CG6565-RC | 327..1514 | 8..1174 | 5205 | 97.1 | Plus |
| CG6565-RB | 2088 | CG6565-RB | 485..1672 | 8..1174 | 5205 | 97.1 | Plus |
| CG6565-RA | 1930 | CG6565-RA | 327..1514 | 8..1174 | 5205 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:33:25
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 13374503..13375153 | 8..658 | 3255 | 100 | Plus |
| 2L | 23513712 | 2L | 13375209..13375633 | 655..1068 | 1650 | 96.9 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:33:26 has no hits.
FMO01541.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:51 Download gff for
FMO01541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6565-RA | 318..1478 | 1..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:46:50 Download gff for
FMO01541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6565-RA | 320..1480 | 1..1145 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:11:51 Download gff for
FMO01541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6565-RA | 320..1480 | 1..1145 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:11:51 Download gff for
FMO01541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 13374496..13375151 | 1..656 | 99 | -> | Plus |
| 2L | 13375211..13375680 | 657..1110 | 95 | <- | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:46:50 Download gff for
FMO01541.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 13374496..13375151 | 1..656 | 99 | -> | Plus |
| arm_2L | 13375211..13375680 | 657..1110 | 95 | <- | Plus |
