FMO01545.5prime Sequence
1013 bp (997 high quality bases) assembled on 2008-03-21
> FMO01545.5prime
CAGTCGACATGAGCAGGATGAGCAAACTACAGGTGATCGTACACCCAGTG
AAGAAAGAGTTCCAGCGCAAAAGCTGCGGTTTCGACCATGATACCCCCGA
TGATTTTGTCAAGTCTCAGTGGCAATCATGTACCAAGAGTATGGCCTATT
TGTTTTATCGCTGGTTCATGGCCATGTTCTTTGTGGTCGTGGTAATAATC
TCAATGTGGCCAGAAACGGATGATGCAACCAGTTATTGGCTCTACTTTAT
CTACATGACCAACTGGGGCATATGGATGTGCATGTTGACCAACGTCTTGG
GTGCTATTCTAGTCACTATATGGCATTATCATCCAGAATATGCGGATAAA
CTGTTGAATATGAAGAGCTACTTTAGCTATTTTCGCTTGTACTGGGGTAT
GCACATCATATCTCTGGTCTTGTCCATCGTCATCACCATCATCTACTGGA
GTATTCTATATGATGCTAATGAAAGCGCCTTGGATGCCACAAATGTACTC
ACTCATGCATTCAACTCGATTTGCATGTTCATCGATCTGTGGATTGTAGC
TCATCCCCTGCGTTTGCTGCATATATTTCTGCCAGTACTATTCGGAGTTG
TGTTTGCCATCTTTTCCTATATCTATCATTTGTGCGGTGGCATTAATAAG
AAAGGCAAACCTTATATCTACTATGTGATTGACTGGAGCAAACCTCAAAA
TGCCTTCACCACGGTAGTTGGCGTACTTTTGTTGTCCTGTTGCATTTATG
TGCTGCTCTTTGCCTTCTTCAACTGAGATTATTCCTCCATCGACGCTGTC
GAAATGCAAATTTCGTACTGCCCACCAGTGCGAATCAAATGGTCAAACTA
ATGGATTAGACGATAAATCCCGGAAATGGAATTCAGCACTCACATCTCGC
ATATCAATGGTATTGGGCAATTTCGCTGGCTATGAGATCAGCTTATTTGC
CCACTGCGCAAGCTTTCTAGACATCGTTTGGCGGGCGGGCCAGGTAAGTG
GTCATATCAAATC
FMO01545.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:41:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG13101-RB | 1589 | CG13101-RB | 425..1376 | 9..956 | 4615 | 99.4 | Plus |
| CG13101-RA | 1396 | CG13101-RA | 360..1311 | 9..956 | 4615 | 99.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:41:54
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 8978047..8978361 | 956..646 | 1265 | 97.8 | Minus |
| 2L | 23513712 | 2L | 8978858..8979086 | 345..117 | 1145 | 100 | Minus |
| 2L | 23513712 | 2L | 8978420..8978605 | 650..465 | 930 | 100 | Minus |
| 2L | 23513712 | 2L | 8978663..8978787 | 469..345 | 610 | 99.2 | Minus |
| 2L | 23513712 | 2L | 8980048..8980158 | 119..9 | 555 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:41:55 has no hits.
FMO01545.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:52 Download gff for
FMO01545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13101-RB | 416..1384 | 1..967 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:42:07 Download gff for
FMO01545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13101-RA | 353..1321 | 1..967 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:30:23 Download gff for
FMO01545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG13101-RA | 353..1321 | 1..967 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:30:23 Download gff for
FMO01545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 8980048..8980164 | 1..119 | 96 | | Minus |
| 2L | 8978858..8979083 | 120..345 | 100 | <- | Minus |
| 2L | 8978037..8978357 | 650..967 | 96 | <- | Minus |
| 2L | 8978421..8978604 | 466..649 | 100 | <- | Minus |
| 2L | 8978667..8978786 | 346..465 | 100 | <- | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:42:07 Download gff for
FMO01545.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 8978037..8978357 | 650..967 | 96 | <- | Minus |
| arm_2L | 8978421..8978604 | 466..649 | 100 | <- | Minus |
| arm_2L | 8978667..8978786 | 346..465 | 100 | <- | Minus |
| arm_2L | 8978858..8979083 | 120..345 | 100 | <- | Minus |
| arm_2L | 8980048..8980164 | 1..119 | 96 | | Minus |
