Clone FMO01546 Report

Search the DGRC for FMO01546

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:15
Well:46
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG9948-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01546.5prime Sequence

680 bp (680 high quality bases) assembled on 2008-03-21

> FMO01546.5prime
CAGTCGACATGCGCACCAGTTACAAGAAAAACAGACCTTTCGACTTCAAG
CTAATTGATCTGGTGGAACCCAATCCTGTGCTCTATAAGAGATCTGGACT
CTCGAACTACGATGCCATGAAGGCGAAAACCGATATCTGGGCTCGCATAG
CCGAGATGATGGGCTGTGATGTGGACTTCTGCCTGATGCGCTGGAACAAT
CTGCACTATCAGTTTCGCAAGGAGTTTCGCCGCGCGGACACCAGTGGATC
CACCTGGCCGTACCTGGAACGCCTGCGATTTTTGGCCGAGATCCAGCCGC
CCTCCAAAGTGAAAACCAAACCCAAAACAAACAAACAGGAGGCGACCATC
CAGACGGAAACTCCTGTGCAATTTTTGTGGGACACTTTTGAGGATGGGGA
TGTTCCACAGCAGTCGAGTACGTTCATAATCGAGGAGGTCATCGAGGAGC
CCAGTGAACAGATCATCCAAGAGGAAATCATCTACGAGGAACAAGAGCCC
GCTGAAATAATCTCGCCCAGAAGCAGCTTTCTCCAGATGGACCAAATACT
GGCCCAACTAAAGGAACCGCAGCGGAGAAGGGCAGAACGAAGGATTACAG
CATTTCTGCTCAAGTGCCAGCTGCGTGCCTTGAGTAATCAGTCCGTGGAG
GACCTTAGCATCGCAAGCTTTCTAGACCAT

FMO01546.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:12:15
Subject Length Description Subject Range Query Range Score Percent Strand
CG9948-RC 779 CG9948-RC 71..725 8..662 3275 100 Plus
CG9948-RB 1394 CG9948-RB 244..898 8..662 3275 100 Plus
CG9948-RA 792 CG9948-RA 84..738 8..662 3275 100 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:12:13
Subject Length Description Subject Range Query Range Score Percent Strand
3L 28110227 3L 6956453..6956944 171..662 2460 100 Plus
3L 28110227 3L 6956234..6956397 8..171 820 100 Plus
Blast to na_te.dros performed on 2014-11-28 20:12:14 has no hits.

FMO01546.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:44 Download gff for FMO01546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 68..736 1..672 98   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:25:57 Download gff for FMO01546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 77..745 1..672 98   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:54:43 Download gff for FMO01546.5prime
Subject Subject Range Query Range Percent Splice Strand
CG9948-RA 77..745 1..672 98   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:54:43 Download gff for FMO01546.5prime
Subject Subject Range Query Range Percent Splice Strand
3L 6956227..6956397 1..171 97 -> Plus
3L 6956454..6956951 172..672 99   Plus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:25:57 Download gff for FMO01546.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_3L 6949327..6949497 1..171 97 -> Plus
arm_3L 6949554..6950051 172..672 99   Plus