FMO01548.5prime Sequence
1181 bp (983 high quality bases) assembled on 2008-03-21
> FMO01548.5prime
CAGTCGACATGGAACTGAGCTGGGAGATAGTGTTCTGCGTGGGCATTGCG
GTGCTGGTTCATGTTCTGGTCTACGTGTTCGTCATGGCCAAGAAACCGAG
GAGCATTGTGGGTCGTCATGTGGTGGTCACCGGCGGCTCCAAGGGAATCG
GACTCTGTCTGGCGGTGGAGTGCGCCATGAAAGGCGCCAATGTGACGGTG
ATAGCGCGCGACGAGAAAATGCTGAGCGGAGCAGTGGCTCTGATGGAAGT
GATTCGCCAGCGGCCAGATCAAAAGTTCCAGTACAGAAGTCTGGACATAA
GCGGCGATTATGACCAGGTGGCCAAAGTGCTTGGCGAGATCGAAGATAGC
TTCGGCCCCATATACACTTTAATAAACTGTGCCGGAATGGCCATTTGCGG
TGTGTTCGAGGAGGTCTCAGTCCAGGATGTCCACAAGCTGATGAACGTAA
ACTTCTTCGGCACCTATAACTGCACCCGTTATGTCCTGCCCAAAATGAAG
AAAGCCGGCGACGGCATTATTGTAATCACTGCCTCACAGGCGGCTATGTT
TGGCATCTATGGATACGGTCCTTACTCAGCCACCAAGTACGCCCTGAGAG
CGATGGCTGAAACGATTGCAATGGAGTCTCGGGAGCACGGGGTCAGCGTC
ACTCTGGCCATGCCCTGCGATACGAATACACCCGGATTCGAGGAGGAGGA
GAAGTCAAAGCCCAGGGAAACCAAAATAATCTCTGGTGGAGGAGGTCTCA
TAGAGCCGGAAGTTATGGCGAAAGCTATACTTAAGGATGCCCTGAAGGGA
AATTCACCTCAACTGTTGGAGCAGAAAGCTGGCTGATCACCACTTTGGGT
GGAGCATTGCTTCCTTGGGATGGCTTCTTCACCAATCTTCTGCACGCCAT
AGTTTTGGGACCACTGCGAATAGTTAGCTACGCTCTGCACAGTACTTCAT
AGTGTATACGCAATGCGCTCGAGAGGATAAGCAGCCACATCGCAGGTGGA
GTCCAGCAAGCTTCTAGATCATTCGTTGGCCGCCGGCCAGGTAGTTGTCT
AATCATAATCAATCATATCATATCCAACTAGCTAGAATCTGCATAACATG
GTCTGCGATTCTCTCGAGACATATAAACGCCCGGGCGCAACGAAGCGTTC
TGAACAATTCGAGTGGGAGTCGTGAGAGGCC
FMO01548.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:18:00
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG10425-RA | 1402 | CG10425-RA | 98..1104 | 8..1005 | 4815 | 99 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:59
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 25261545..25262113 | 794..226 | 2845 | 100 | Minus |
| 3R | 32079331 | 3R | 25262183..25262401 | 226..8 | 1095 | 100 | Minus |
| 3R | 32079331 | 3R | 25261289..25261474 | 981..800 | 730 | 97.8 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:17:59 has no hits.
FMO01548.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:47 Download gff for
FMO01548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 87..1100 | 1..1005 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:34:50 Download gff for
FMO01548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 91..1104 | 1..1005 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:56:05 Download gff for
FMO01548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG10425-RA | 91..1104 | 1..1005 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:56:05 Download gff for
FMO01548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 25261261..25261480 | 795..1005 | 95 | <- | Minus |
| 3R | 25261545..25262113 | 226..794 | 100 | <- | Minus |
| 3R | 25262184..25262404 | 1..225 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:34:50 Download gff for
FMO01548.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 21086983..21087202 | 795..1005 | 95 | <- | Minus |
| arm_3R | 21087267..21087835 | 226..794 | 100 | <- | Minus |
| arm_3R | 21087906..21088126 | 1..225 | 98 | | Minus |
