FMO01549.5prime Sequence
1217 bp (951 high quality bases) assembled on 2008-03-21
> FMO01549.5prime
TATAAAACAAAGTTATCAGTCGACATGCGTGACCTCGGCACCAAAATGGC
CGAGCTAAAATTCGAGGCTCCATTGGCAAAGTTCGAGGAAACGGACGAGT
GGGGCGGCTGCGACTTCATCTCGAGTCAGAATGCCATAAACGACACGCTC
AACCTGAATCTGAAGGACTCCTCCGCCGGCGGCAAGCCGGATGCCACCAA
GCTGCGGCTCCTAGAGGATGCTGTACGCGATGCGCACGTGAGCAAGAACG
GAGGAGGAGTAGTGGGAGGAGGAGCTGGCTCCATTAGCCCCAATTGCAAC
ACGCTCCAGGGTGGGTCGCTTATTGAAATCGGCCTGTCCGATGTGGGATT
GGTGCCGGGCGAGGGAGCCGGCGTTGGTCTGGACGGTCTGGAGAAGCGCT
CCCTGGCCGTCGGCGACCATGTGGACAACTTCACGGAGACCTTCGGCGGA
AGTCTGGAGGATCTGGTCAATACGTTCGACGAAAAGATAACCAAGTGTTT
CGGCAACTACGAAGAGAACGTCGAGGAGCTGGCTCCGGTGCAGGTGCGCA
GCCAGGAGGAGATCATGAACGAATGCCAAATGTGGTGGACCATCACAGGA
AACTTTGGCAACATTCTGCCCATCGACTGGTCCAAGTCGTACACCCGTCA
GATGCACATGCCCACACTGAATCTGGGCTAGAACCACACGAAGCAGCAGC
AGCAGAATCGCAACCAGCAGCAGCAGTTGCACAACCAGAGCCATCAGCGT
ATCCACACACCAACGGTTTGGGATCCGGATCCGGATCCGGCCTGATGCCC
AGACTCCGGGCGATGAGTTCAACGATCTGACCAGTGAGGACGAGGCGGTG
GTCAACGATTTGGACATGCACGCCCTCATCCTTAACGGCTTGAACGGTGA
CATGGACGACCAGCCGATTAGACGGTAGAGAGGTGATCAAAGAGATCGAC
GACATCATGGACGAGGCCGAGAGCCGCTGACGAGCGGAGACCTGCGATTC
GAAGGTGATCGAGAGCTCGAGAGTGCTGGGCGCCCCCCTTCTATGCCGAA
AACTGCAATATCTGACCCGACCACTGACGACCTGTACATGGAATGAGTGC
TGATCCATGAGCTGAACGGAACGTGATCACGAGACTGGCCCTGCCCACAG
CTGGAATCGAAAGACTCGTAAAACCTTTCATCCCTCCGGTCTCCGCGATC
CAAACACAACGGCGCGG
FMO01549.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:31:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Unc-76-RC | 3825 | CG3981-RC | 496..1634 | 24..1144 | 5000 | 97.1 | Plus |
| Unc-76-RA | 2860 | CG3981-RA | 386..1524 | 24..1144 | 5000 | 97.1 | Plus |
| Unc-76-RB | 2970 | CG3981-RB | 496..1634 | 24..1144 | 5000 | 97.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:31:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 2081105..2081659 | 24..578 | 2775 | 100 | Plus |
| X | 23542271 | X | 2090969..2091439 | 579..1039 | 1815 | 96.8 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:31:08 has no hits.
FMO01549.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:25:29 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:49 Download gff for
FMO01549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-76-RB | 492..1624 | 19..1133 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:10:45 Download gff for
FMO01549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Unc-76-RB | 492..1624 | 19..1133 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:10:45 Download gff for
FMO01549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 2081101..2081659 | 19..578 | 99 | -> | Plus |
| X | 2090969..2091450 | 579..1050 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:49 Download gff for
FMO01549.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 1975134..1975692 | 19..578 | 99 | -> | Plus |
| arm_X | 1985002..1985483 | 579..1050 | 96 | -> | Plus |
