FMO01550.5prime Sequence
1209 bp (1028 high quality bases) assembled on 2008-03-21
> FMO01550.5prime
CAGTCGACATGAAGCCAAAGCAGAAGATTTCCGTAGAGCCGCTATTGCTA
GTCGCAATTCTCATCGGAGTTCTGGTAGCCGCCACCCACGCTCAAGATCA
GAAATCGGTGAAACCATCGGCGGCAGCGCCATCAGCAGCAGCTTCTCGGC
CCCATGATGAAATCTATATCGACGATGATAGCATCGAGGGATCCGGCGGA
CGCGGCGGTATACACGAAGATCTAGAGAAAGATCCGGACTATTCTGGCTC
CGGCTTTGGACCCGATGACGAGGACGCCGAACCCGATCAGCATTCGCACA
GTTCGCACAACACGCGCATCTCGCAGAGCAGCAACTCCGGCATAAACACA
GCTCATACACCAACACAAACCTCATCCACAATCCCAACAACATCGACTTC
GACACCAATGCCGACAACAACCCCCACAGCGACAACCCCCGCATCCACCA
CAACGGCGGCAGCAACCCAGATATCGTCCTTTGCCAATAGCAGTAGCACC
ACCACCACCACGTTGGCTCCCACGATTCCCGCAGAACCGCAGCAACCGCT
GTTCCCGCCATTCGACAAGGATCTGGATACGGAGTCCAGCGGCGATGGCA
TCGATGCTGATGCTGAGGATGACGATGAGGACGATGGCGACGATAAGGAC
TATGACTATAACAAGGAGCTGGACAAAGAAATCGACATCGATGGTCCCGA
GCCGGGACATCTGCCGCCAGTTGTCCATCATAATACCGTTGAAACTGGTC
ACATACCCACTACGGATGAAATCGATGTGGATGGCGGCGATGAGGATGAC
AATGGGGATAGCGACATCGATGGTCCGCGGATCGGTGGCAACGATGGAGA
TATTACAGAGCGCGGACCGGGTGCAGTGGCAGCAACGTGCACGAATTGGA
CCCAATACGAACGTGAATAGCCAGCCCTCGACACAAAGGGCATCGATCAC
AGGCCCAACGGCAACGAAGTGTCATCATGAGCGAGGACGATCGCACGTCG
AGCTCTCTCGCAGCCCGGAATTCTGGCTGCTGTCATGGCGTGCGTCGTGC
TGCCTCTGCGCCAATACTCGTGTCATGTTCATCGTGTACCGCAATGAAGA
AAAAGGACAGGATCTATGCCTGAACGAGCCAAAGAGATGCCGGCAATCGA
ATGGCCAGTATGCGATACGCGAGATTCAAGCCGCAAGCTTCTGACACAAT
TCCTTTGTG
FMO01550.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:07
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Sdc-RA | 2482 | CG10497-RA | 337..1487 | 9..1144 | 5225 | 98 | Plus |
| Sdc-RD | 1869 | CG10497-RD | 337..1484 | 9..1144 | 5170 | 97.7 | Plus |
| Sdc-RH | 2245 | CG10497-RH | 195..1250 | 101..1144 | 4710 | 97.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:05
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 21398065..21398583 | 867..349 | 2595 | 100 | Minus |
| 2R | 25286936 | 2R | 21399175..21399313 | 348..210 | 695 | 100 | Minus |
| 2R | 25286936 | 2R | 21394878..21395036 | 1029..876 | 565 | 96.2 | Minus |
| 2R | 25286936 | 2R | 21412311..21412421 | 209..99 | 555 | 100 | Minus |
| 2R | 25286936 | 2R | 21480091..21480183 | 101..9 | 465 | 100 | Minus |
Blast to na_te.dros performed 2014-11-28 20:03:06
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Dvir\TART | 8500 | Dvir\TART TARTVIR 8500bp | 2374..2533 | 286..450 | 173 | 60.5 | Plus |
FMO01550.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:25:34 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:35 Download gff for
FMO01550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RA | 337..1494 | 9..1152 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:54 Download gff for
FMO01550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Sdc-RA | 337..1494 | 9..1152 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:54 Download gff for
FMO01550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 21394878..21395045 | 868..1029 | 96 | <- | Minus |
| 2R | 21398065..21398583 | 349..867 | 100 | <- | Minus |
| 2R | 21399175..21399313 | 210..348 | 100 | <- | Minus |
| 2R | 21412311..21412418 | 102..209 | 100 | <- | Minus |
| 2R | 21480091..21480183 | 9..101 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:35 Download gff for
FMO01550.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 17282383..17282550 | 868..1029 | 96 | <- | Minus |
| arm_2R | 17285570..17286088 | 349..867 | 100 | <- | Minus |
| arm_2R | 17286680..17286818 | 210..348 | 100 | <- | Minus |
| arm_2R | 17299816..17299923 | 102..209 | 100 | <- | Minus |
| arm_2R | 17367596..17367688 | 9..101 | 100 | | Minus |
