FMO01553.5prime Sequence
1214 bp (1027 high quality bases) assembled on 2008-03-21
> FMO01553.5prime
CAGTCGACATGACCTCGTCCGAAACATCAGCATCGGCTTTCTCGAGCTCG
GACACAGCCGCCCTGGAGCGTCAGGCGGAAGTGGAGCAGCCGGTGACCTT
GGAACAGATCTGGAACGAAAACCACCGGCGATCGAGCGTAGATTGGATTC
GCAAAAGTGGTTACAAAAGGGTTTGCCTGCAATTCCCAGACGACTATCTG
CCCCACAGCAATGCAATTAGTGTGGGCCTGAAGGAGCTACTTGCGCCGGA
GGACGTGAAAGTCTTCATCCTGGCGGACACCACATACGGAAGCTGCTGCG
TGGACGAGATTGCGGCTGCCCATGTGGATGCAGACAGTGTGATTCACTTC
GGAAACGCATGTCGCAGTAGGGCCGCCCGCCTGCCGGTACTTTACCTTTA
TCCAGAGTTGCCGCTGGATGTGAATGTTCTCCTGAGCAAGCTGCAAGGTC
TGCGCGCGGAGAGCATAGATCGACAGGTATGCGTGTACCTGGACATTGGG
TACCAGCATGTGTACGGGGAAAAGCTAAAGAAGCAGCTGTCCGAGATCCT
GGAGCCCAAAGAACTGCTGCTGGAACTGTTTCCGCCCATCGAGGCAGAAT
CAACGACAACTAGGGAGACCACGAACCTTGAGAGGATTTGTATTTTCATA
GGCGCCGATAACCAGCGATTCGCTAATCTCTCTCTGACCGCTCCAGCTGC
CGTGCAATGGCACATCTACGATGGATCATCTGACAGTCTCAGCTCAAAAA
ATCCCCTCACGGCTCAGTTCATCCGCCGTCGCTACTTCCACATCGAAAAG
TGTAAGGATGCACAACACTGGGACTCATTGTGGCCACTCTTTCGGCTGAA
GGTTACTTAGATGTGGTGACGCGACTGCAAACAATGGCGAAGGCAGAGGC
ATTAGACGCAGCTTATTTCCCGTGGGCAGATTAACCCAGCCAACTCGCTA
CTTCCTGGAAATCGATTGTTTGTCCTGATCGGTTGCCCGTTCATATTTGT
ACGACTCCAAGAGTACTAATAAGCTCATTGTTCCTGTTTTCGAGCAGAGA
TGCCTTGATCCGCCTGACACATGGAAATACCCGAGCTTAGTACCGAATTC
CAACACTTCGCCGAGACCCACCTTCTTGCCTTTGATGCCGCGAATCCAGA
ACGACTTCGCTTGTGAAGTGAGTCTACAGAAGCGTCTCACAATCCCTGGA
AAACGAGGTGGAAT
FMO01553.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:03:57
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG7265-RA | 1510 | CG7265-RA | 86..1236 | 9..1138 | 4925 | 96.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:03:56
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 14892773..14893655 | 1044..170 | 3775 | 97.5 | Minus |
| 3R | 32079331 | 3R | 14893706..14893869 | 172..9 | 820 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:03:56 has no hits.
FMO01553.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:02 Download gff for
FMO01553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 77..1154 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:42:45 Download gff for
FMO01553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 77..1154 | 1..1066 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:58:26 Download gff for
FMO01553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG7265-RA | 78..1155 | 1..1066 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:58:26 Download gff for
FMO01553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 14892747..14893654 | 171..1066 | 97 | <- | Minus |
| 3R | 14893708..14893876 | 1..170 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:42:45 Download gff for
FMO01553.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 10718469..10719376 | 171..1066 | 97 | <- | Minus |
| arm_3R | 10719430..10719598 | 1..170 | 97 | | Minus |
