FMO01554.5prime Sequence
712 bp (712 high quality bases) assembled on 2008-03-21
> FMO01554.5prime
AACAAAGTTATCAGTCGACATGAATCCCTGTGTGCTGCCCACCCCATTGC
CCGATCTGGATGGCGACAAGCGTTGGCACAGCATACATCGCCGGTTCATC
TCCGATTGCCGCGAAAAGGATCCGGATGTGATATTCCTCGGCGACTGCAT
CTTCGAGACCGTCCAGGACACGGAGGCCTGGAATAAGTACTTTGCGCCGC
TGCACTGCCTTAACTTCAGCATTCGCGACGACTGCACCGAGCACGTACTG
TGGCGCATCGAAAACGGTGCGCTGGACAATGTGAATCCCAAAATCGTCGT
CCTCCATGTGGGCACCAATAATGTGCGGAACAGCGCGGAGGAAGTGGCCG
AGGGTGTGCTCGCGAACGTAACGAAAATCCGGCAAAAGCTGCCCAACGCC
TATATCGTTTTGCCCTCGCTACTGCCGCGTGGCCAGCAGCCCAATAAGTT
GCGCGAAAAGAATGCCAAAATCAACGAGGTGGTCAATGGATTGACCAAGG
GCTTGTATCGCGTCCAGACGGTGGCCATTGACAAGGGTTTGGTCCAGACC
GACGGCAGTATCAGTCATCACGATATGTTCGACTATAAAAATCTAACCAA
TGCTGGAGCGAAAAAGATATTAGAACCACTCTACGATCTGCTTTCTCAAA
TTCTCAACGAAAACGAACCTGAAAACGATCTCACCCCCTCCGAAGCAAGC
TTTCTAGACCAT
FMO01554.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:03:18
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Paf-AHalpha-RB | 1435 | CG8962-RB | 448..1126 | 16..694 | 3380 | 99.9 | Plus |
| Paf-AHalpha-RA | 1507 | CG8962-RA | 520..1198 | 16..694 | 3380 | 99.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:03:15
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 15784665..15785064 | 415..16 | 1985 | 99.8 | Minus |
| X | 23542271 | X | 15784318..15784596 | 694..416 | 1395 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 20:03:17 has no hits.
FMO01554.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:03 Download gff for
FMO01554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG8962-RB | 444..1125 | 16..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:50:43 Download gff for
FMO01554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RA | 520..1201 | 16..698 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:34:59 Download gff for
FMO01554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Paf-AHalpha-RA | 520..1201 | 16..698 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:34:59 Download gff for
FMO01554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 15784314..15784596 | 416..698 | 99 | <- | Minus |
| X | 15784665..15785064 | 16..415 | 99 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:50:43 Download gff for
FMO01554.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 15678347..15678629 | 416..698 | 99 | <- | Minus |
| arm_X | 15678698..15679097 | 16..415 | 99 | | Minus |
