FMO01556.5prime Sequence
1193 bp (999 high quality bases) assembled on 2008-03-21
> FMO01556.5prime
CAGTCGACATGCTGCTGCTACTATGTGTTAATATGTCGGGGACGCAAATG
TCTGCCTTCCTGAGAAAGTATCTAGCCGACGAGGACAAAAAAATTCGTGC
GCAATTCAAAGAAAGCGATCCTAACAACAAATTGATTCTATGGATGCACG
AAAAAACGAGAATAACCGAGGAGGACTTGGCACGCCCATACACCGAGGAC
GAGGTAAAGGAGCTTTGTCTACGCACCAAAGTGAAGGTTGATATGACCGC
TTGGAATTGTCTGTGGGAAGCCAAAAAGAGGTTTGAAGCAAAAGGACGTT
TTGTGAACAAGTCTGAGAGATTCATCAACCGAATGTATATGAAAGCGGTG
CGCAGAAAGATGGTCCAACCGTATCCGGAGGAGTTTGTGGCCCAGCGAAG
AGAAATAGTTGCAGCCGAGACTAAGAAGCAGAACATCAGCCGATTGGATA
GATGGCAAAAGAAAAAGAGTCAAAACCTATCAGCACCAGAATCCTCTCCA
GACGCTCATGCATCTTCTAATGACGCGGTGCAGAGCCACGAGGACCAAGC
AAACACAAATCTTAGTTCACTGTCTCAAATGAACTTTCAAGTGGAAGCGA
TGGCTCCGCCAGGCGTGTCGTCATCTGATCTTAGCGGCATCGGAGACGAT
GAGGACGAACAGCAGCAGTCAGGATTTCAGGATGAGAACATCAACCGTCC
AGAGACAGAGATTAATGAGAATTCGGTGAGATGTGATCCAATTAATTTAG
GAAGGATGCGGACTGGATGTATAAATTCGCAAGCAAATAACAGTTTCCCG
GAATACGGAGTCTGATCCGGACTACTATATGTTTGGCACCCAATTGAGCA
CATTAGTACGACCCACGTCGACTCAAGAGCCTGACGATCAGGTAAACTGT
CCAGAGAAAGAGATGAATGAAGAGCTGGGTAAGTGTGATCAAATTAATTC
GGAAAGCTTGTCGATTGACGTCATTGATCGGAGGACTATCACTTTTCAAA
ATACAGGAATCTGAGCGATCGACGTCACTCATAGCGCAGCTTTCTAGAAC
ATTCGTTTGGCCGCGGCCAGTTAGTTGCATATCATAATTCTATCTTATCT
ATTCCAACTAGCTAGGAGATTCTGCTGACATGCTGAATTCCACAATAAAG
CCTGGGCGCGCCAAATGTGAGCGATCTCGGAACAAATTCGAAT
FMO01556.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:20:13
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| cav-RA | 1520 | CG6219-RA | 378..1402 | 9..1028 | 4850 | 98.8 | Plus |
| cav-RD | 1649 | CG6219-RD | 523..1531 | 25..1028 | 4770 | 98.8 | Plus |
| cav-RB | 1226 | CG6219-RB | 102..1108 | 27..1028 | 4760 | 98.8 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 20:20:10
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 24222535..24223343 | 158..967 | 3890 | 99.5 | Plus |
| 3R | 32079331 | 3R | 24222343..24222474 | 27..158 | 660 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 20:20:12 has no hits.
FMO01556.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:04 Download gff for
FMO01556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6219-RA | 384..1417 | 9..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 23:36:31 Download gff for
FMO01556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RA | 378..1411 | 9..1035 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:57:33 Download gff for
FMO01556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| cav-RA | 378..1411 | 9..1035 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:57:33 Download gff for
FMO01556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 24221908..24221925 | 9..26 | 100 | -> | Plus |
| 3R | 24222343..24222474 | 27..158 | 100 | -> | Plus |
| 3R | 24222536..24223419 | 159..1035 | 98 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 23:36:31 Download gff for
FMO01556.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 20047630..20047647 | 9..26 | 100 | -> | Plus |
| arm_3R | 20048065..20048196 | 27..158 | 100 | -> | Plus |
| arm_3R | 20048258..20049141 | 159..1035 | 98 | | Plus |
