FMO01557.5prime Sequence
1069 bp (969 high quality bases) assembled on 2008-03-21
> FMO01557.5prime
CAGTCGACATGAGTTCCGCTGAGTACTACCCATTCAAGTGCACACCCACT
GTCTACCCGGCGGATCCCTTCGATCCCGTCGAGGATGCGGCTATTCTGCG
CAAGGCGATGAAAGGCTTCGGCACCGACGAGAAGGCCATCATCGAGATCC
TGGCCAGGCGTGGCATCGTCCAGCGTTTGGAGATCGCTGAGGCGTTCAAG
ACCTCGTACGGCAAGGACCTGATCTCGGACCTCAAGTCCGAACTGGGCGG
CAAATTCGAGGATGTTATCCTGGCTCTGATGACGCCGCTGCCCCAGTTCT
ATGCCCAGGAGCTGCACGACGCCATCTCGGGACTGGGAACCGACGAGGAG
GCCATCATCGAGATCCTCTGCACGCTGTCCAACTACGGCATCAAGACCAT
TGCCCAGTTCTACGAGCAGAGCTTCGGCAAGTCCCTAGAGTCCGACCTGA
AGGGCGACACCAGTGGCCACTTCAAGCGGCTGTGTGTCTCGCTCGTCCAG
GGCAACCGGGATGAGAACCAGGGCGTGGACGAGGCCGCGGCCATCGCCGA
TGCCCAGGCTCTGCACGACGCCGGCGAGGGACAGTGGGGCACAGATGAGT
CCACCTTCAACTCGATCCTGATCACCCGCTCCTACCAGCAGCTGCGCCAG
ATCTTCCTCGAATACGAGAATCTGTCGGGCAACGACATCGAGAAGGCCAT
CAAGCGGGAGTTTAGCGGCTCCGTGGAGAAAGGGTTTCCTGGCCATCGTC
AAGTGCTGCAAGTCCAAGATCGACTACTTTTCGGAGCGCCTGCACGACTC
AATGGCCGGCATGGGCACCAAAGACAAGACGCTGATCCGCATCATTGTCA
GCCGGTCGGAGATCGATCTGGGTGACATCAAGGAGGCATTCCAGACAAGT
ACGGCAAGAGCTTGGAGTCCTGGATCAAGGACGACCTCTCCGGAGACTAC
AGCTACGTCTTGCAGTGCCTGCCTCTACGCAAGCTATCTAGACCATTCGT
TTGGCGCGGCGGGCCCAGGTAGTGGTCATAATCATATCATATCATAATCA
TAATCACACTAGCCTAGGA
FMO01557.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:19
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| AnxB9-RB | 1184 | CG5730-RB | 70..1032 | 9..971 | 4755 | 99.7 | Plus |
| AnxB9-RD | 1300 | CG5730-RD | 186..1148 | 9..971 | 4755 | 99.7 | Plus |
| AnxB9-RF | 1457 | CG5730-RF | 95..1020 | 9..934 | 4555 | 99.6 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:17
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 21068067..21068777 | 37..748 | 3510 | 99.9 | Plus |
| 3R | 32079331 | 3R | 21068837..21069020 | 748..930 | 855 | 98.9 | Plus |
| X | 23542271 | X | 16418705..16418779 | 383..309 | 225 | 86.7 | Minus |
| 3R | 32079331 | 3R | 21070722..21070765 | 928..971 | 220 | 100 | Plus |
Blast to na_te.dros performed on 2014-11-28 22:45:18 has no hits.
FMO01557.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:06 Download gff for
FMO01557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG5730-RD | 190..1173 | 1..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:44 Download gff for
FMO01557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RD | 178..1161 | 1..983 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:01 Download gff for
FMO01557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| AnxB9-RD | 178..1161 | 1..983 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:01 Download gff for
FMO01557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 21067462..21067499 | 1..38 | 92 | -> | Plus |
| 3R | 21068069..21068777 | 39..748 | 99 | -> | Plus |
| 3R | 21068838..21069019 | 749..929 | 98 | -> | Plus |
| 3R | 21070724..21070778 | 930..983 | 92 | | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:44 Download gff for
FMO01557.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 16893184..16893221 | 1..38 | 92 | -> | Plus |
| arm_3R | 16893791..16894499 | 39..748 | 99 | -> | Plus |
| arm_3R | 16894560..16894741 | 749..929 | 98 | -> | Plus |
| arm_3R | 16896446..16896500 | 930..983 | 92 | | Plus |
