FMO01558.5prime Sequence
1193 bp (964 high quality bases) assembled on 2008-03-21
> FMO01558.5prime
CAGTCGACATGCCACTGTTCGGGAAGTCACAGAAGTCGCCAGTGGAGCTG
GTCAAGTCGCTGAAGGAGGCGATCAACGCCCTGGAGGCGGGCGACCGCAA
GGTGGAGAAGGCGCAGGAGGACGTCAGCAAGAACCTGGTCTCGATCAAGA
ACATGCTGTACGGTAGCAGCGATGCCGAGCCGCCGGCGGACTACGTGGTG
GCCCAGCTGTCCCAGGAGCTGTACAACAGCAACCTGCTGCTGCTGCTCAT
CCAGAACCTGCACCGCATCGATTTCGAGGGCAAGAAGCATGTGGCGCTCA
TTTTCAATAATGTGCTGCGCCGCCAGATTGGCACCCGTTCGCCCACCGTC
GAGTATATATGCACGAAGCCGGAGATCCTGTTCACCCTGATGGCCGGCTA
CGAAGATGCGCATCCGGAGATCGCACTGAACTCCGGTACCATGCTGAGGG
AGTGCGCCCGGTACGAGGCGCTGGCCAAGATCATGCTGCACTCGGATGAG
TTCTTCAAGTTCTTCCGCTACGTGGAGGTTTCCACCTTTGACATTGCCAG
CGATGCCTTTTCTACGTTCAAGGAGCTGCTCACGCGCCATAAGCTGCTGT
GCGCGGAGTTTCTGGACGCCAACTACGACAAGTTCTTCTCGCAGCACTAC
CAGCGCCTGCTCAACTCGGAGAACTATGTGACGCGGCGTCAGAGCTTGAA
GCTGCTTGGGGAACTGCTGCTGGACCGGCACAATTTCACCGTGATGACGC
GCTACATATCCGAGCCGGAGAACCTCAAGCTAATGATGAACATGCTCAAG
GAAAAGTCGCGCACATTCAGTTCGAGGCGTTTCACGTCTTCAAGTGTTCG
TGGCCAATCCCAACAAGCCGAAGCCCATTCTGGACATCCTGCTGCGCACC
AGACGAGCTGGTCGACTTTCTGACCAACTCATACGGATCGCTCGAGACGA
GCAGTCACGACGAGATGCTATCTGATCAGCGATGATGGAGCTGAGCCGCT
GCCGAGCTGCAAGCTTTCTAGAACATCGTTTGGCGCGGCGGGCCAGTAGT
GTCTAATCTATGCGAATCAATCGTAATCCAACTAGCTAGAGATCTGGCTG
AACTGCTTGATTCCACAATAAATGCCGGGACCGACTCGAAATCATGGATC
GAGCCTAATGATCTCACACGAGTCCAAGCCAGACTCCATCTCA
FMO01558.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:55:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Mo25-RB | 1899 | CG4083-RB | 300..1313 | 5..1003 | 4655 | 98.1 | Plus |
| Mo25-RA | 2255 | CG4083-RA | 300..1313 | 5..1003 | 4655 | 98.1 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:55:28
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3L | 28110227 | 3L | 16614229..16615173 | 943..5 | 4445 | 99.3 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:55:29 has no hits.
FMO01558.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:53:53 Download gff for
FMO01558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG4083-RA | 297..1270 | 1..965 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:45:55 Download gff for
FMO01558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 297..1270 | 1..965 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:30:59 Download gff for
FMO01558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Mo25-RA | 297..1270 | 1..965 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:30:59 Download gff for
FMO01558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3L | 16614203..16615176 | 1..965 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:45:55 Download gff for
FMO01558.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3L | 16607303..16608276 | 1..965 | 98 | | Minus |
