FMO01562.5prime Sequence
728 bp (728 high quality bases) assembled on 2008-03-21
> FMO01562.5prime
CAGTCGACATGTCCGCATTTGGTGAAACCGGTCAGAATGGCGTGTGCAAG
CAGCGCCCATTGATTTGCTCCATACTCGATCCCAATGCCTGGTTTAAGCC
CGAACGTTTGCACCCGCAAGTGGAATCCCTTATCTACTGGCGCGATGTGA
AGAAATCCGGCATTGTCTTCGGCGCTGGCCTGATCACACTGGCGGCCATC
TCCAGCTTCTCGGTGATCAGCGTGTTCGCCTACTTGTCGCTCCTAACCCT
CTTCGGCACCGTCGCCTTCAGAATCTACAAATCTGTGACACAGGCCGTGC
AAAAGACAAACGAGGGTCACCCCTTTAAGGATTACCTGGAGCTGGATCTG
ACGCTGTCGCACGAAAAGGTACAGAACATTGCCGGCGTGGCTGTGGCACA
TATCAATGGCTTCATCTCCGAGCTGAGGCGTCTGTTTCTTGTTGAGGATA
TCATCGATTCGATCAAGTTCGGCGTCATTCTGTGGGTCTTCACCTACGTG
GGTGCCTGGTTCAATGGCATGACTCTGGTCATCTTGGCCTTTGTCTCGCT
GTTTACCTTGCCCAAGGTCTACGAGAACAACAAGCAATCGATCGACACTC
ACTTGGATCTGGTGCGCAGCAAATTGACAGAAATCACCGACAAGATCCGA
GTGGCCATCCCCATTGGCAACAAGAAGCCCGAGGCCGCTGCCGAGTCTGA
GAAGGACAAGGCAAGCTTTCTAGACCAT
FMO01562.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:10:42
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Rtnl1-RJ | 2311 | CG33113-RJ | 207..908 | 9..710 | 3510 | 100 | Plus |
| Rtnl1-RI | 1495 | CG33113-RI | 224..925 | 9..710 | 3510 | 100 | Plus |
| Rtnl1-RB | 1539 | CG33113-RB | 268..969 | 9..710 | 3510 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:10:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2L | 23513712 | 2L | 4994786..4994996 | 329..119 | 1055 | 100 | Minus |
| 2L | 23513712 | 2L | 4994508..4994716 | 537..329 | 1045 | 100 | Minus |
| 2L | 23513712 | 2L | 4994338..4994445 | 644..537 | 540 | 100 | Minus |
| 2L | 23513712 | 2L | 5004614..5004689 | 84..9 | 380 | 100 | Minus |
| 2L | 23513712 | 2L | 4994211..4994277 | 710..644 | 335 | 100 | Minus |
| 2L | 23513712 | 2L | 5004172..5004207 | 120..85 | 180 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 22:10:39 has no hits.
FMO01562.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:25:38 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:53:21 Download gff for
FMO01562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl1-RB | 261..974 | 1..715 | 99 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:07:15 Download gff for
FMO01562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Rtnl1-RB | 261..974 | 1..715 | 99 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:07:15 Download gff for
FMO01562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2L | 4994206..4994277 | 644..715 | 97 | <- | Minus |
| 2L | 4994339..4994444 | 538..643 | 100 | <- | Minus |
| 2L | 4994508..4994716 | 329..537 | 100 | <- | Minus |
| 2L | 4994787..4994994 | 121..328 | 100 | <- | Minus |
| 2L | 5004172..5004207 | 85..120 | 100 | <- | Minus |
| 2L | 5004614..5004693 | 1..84 | 95 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:53:21 Download gff for
FMO01562.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2L | 4994206..4994277 | 644..715 | 97 | <- | Minus |
| arm_2L | 4994339..4994444 | 538..643 | 100 | <- | Minus |
| arm_2L | 4994508..4994716 | 329..537 | 100 | <- | Minus |
| arm_2L | 4994787..4994994 | 121..328 | 100 | <- | Minus |
| arm_2L | 5004172..5004207 | 85..120 | 100 | <- | Minus |
| arm_2L | 5004614..5004693 | 1..84 | 95 | | Minus |
