FMO01563.5prime Sequence
1238 bp (618 high quality bases) assembled on 2008-03-21
> FMO01563.5prime
CAATCCACATGGAGAACGCACTTAAACGGCGATCTTTAACGCTCAGCACG
CGTCTGCTGCATAAGCGCCACAGTGCTTCACCACAGAGCGTACGCACAGG
GCACAATGTAAGTGTATCCGTGGACACTCCCGGCTCGCCCAACTCCTCAG
CAGTAGTGGGAATCACGTCCGACCTGGAGAGCACTCCACCACACAAACAC
AAGCCCAGCTTGGACGACAGTGTGGACTTCTCGCCCCGTTTGGACATCAG
CCTTTCGCCCAGCTGCCTCTTCTCCCAAACACTGGCCACCGAAAGTCCGG
AGGTGGGCTGGCGCTGGAACCGAAGCAGCAATGCCACCACGGACAGTGGC
TTCGACTCCGCGGAAATAGGCAGTTTGAGCCAGCGCGAACGACGCCGGAA
GATAGCCTTTAAGGGCGTCGAGGATAAACGCAGCCAACTGGACAATGAGC
AGTGGCGGGCACAGCAGATGCGGGCTAATGTTCTTCTTAAGGAGCGCTGT
GCTAGGCTCAATAGCCAGTTGGAGCAAATAGCTGTGTCCGAACCAATAAT
GCCACTAAAAACTCCTAGAGCTCCGTCACCTGTTGCTCCGCGCACAAGAT
TAACCTGCACGAAGGCTACGCCAGAGCCAGTGCTTTCCCCTGTAGCTGCC
TCCGATCCAATGGCAGACTTCCTCAACGACTCGGAGACTGATCTCTTCCT
GCTTGAGGCCTCCCAGCAACTGGAGTCGAAATAGAACACCATGAACCTCC
CAAATCAAGCACAAGCACCACACCCACTAGGCACCACACGGCAAAGCGAC
CCTCCTTCTACATGAAATTTCTGGAAGACGAAGCGATGGCGAGGACTGGC
TAAACGCTCTAGAAGAGGCAGTGCAGCAGCTAAATGCCGAAGATGCCGCG
CTCATCGCTGCATCGCTTCAATCATGCTACACAGGGATTCGTGCAGCGGA
TGTCCACCCTGACCATTGTGCGCCAATCAAATGCCTGCCAAGTGCCTCCT
CCGCATCTGCTCGAGCTAGGTATCTTCAGCATCAACGGACCCAGTTTGCA
GCTCTGTCCAAGCCAATGCAATGGCGGCGGCTATTTCTTTGGCCACCGGA
AGCAAGCTTCTGGACATTCGTTTGGCGCCGGGTCAGTTATGGCCAATATT
CTATACATATTTCGAGTCGGATACACATGCTAGAGCAATCTGGCCATTGA
CATATGGGCTGTCGATTGTCGCAATTATAAAGGTTTCT
FMO01563.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:22:41
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG6425-RA | 2101 | CG6425-RA | 126..1140 | 9..1009 | 4480 | 96.9 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:22:39
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 3R | 32079331 | 3R | 26716191..26717139 | 1009..75 | 3875 | 96.1 | Minus |
| 3R | 32079331 | 3R | 26717198..26717264 | 75..9 | 335 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 19:22:40 has no hits.
FMO01563.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:15 Download gff for
FMO01563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6425-RA | 122..1153 | 9..1023 | 96 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:36:05 Download gff for
FMO01563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6425-RA | 126..1157 | 9..1023 | 96 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 20:17:23 Download gff for
FMO01563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG6425-RA | 126..1157 | 9..1023 | 96 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 20:17:23 Download gff for
FMO01563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 3R | 26716121..26717138 | 76..1068 | 95 | <- | Minus |
| 3R | 26717198..26717264 | 9..75 | 100 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:36:05 Download gff for
FMO01563.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_3R | 22541843..22542860 | 76..1068 | 95 | <- | Minus |
| arm_3R | 22542920..22542986 | 9..75 | 100 | | Minus |
