Clone FMO01567 Report

Search the DGRC for FMO01567

Clone and Library Details

Library:FMO
Tissue Source:D. melanogaster
Created by:Charles Yu
Date Registered:2006-03-07
Comments:BD Creator expression clones with C-terminus FLAG HA tag for tissue culture
Original Plate Number:15
Well:67
Vector:pMK33-CFH-BD
Associated Gene/TranscriptCG5149-RA
Protein status:
Sequenced Size:Not sequenced

Clone Sequence Records

FMO01567.5prime Sequence

1219 bp (1012 high quality bases) assembled on 2008-03-21

> FMO01567.5prime
CAGTCGACATGGGAAATGCGAGTGGCAAGCGGGAGACGGATAATCTCTAC
AATTCGGAAGAGCTACGCATGCTGGAATCCGCGTACAAAAACGCCTCTGG
CGGAGCACTTGAGAAGTTGACCCAAGACAGATTGGTGGAAACTTGGTCGC
AAACCATCGAAAGATCCCTGGCCGAAAGTACGGCTCAGTATCTATTTACG
CCCACGAAGCCAGGTCAGCAATGTGTCAACCTTCAGCTGAAGAAATTTGG
AGAGCCCTACTACATCATGGAACGCGGTACTATTGACCAGAAAATGCAAA
TGCTCCTGGGCTCAATGGAGAGAAGTGGAAATGACACCTTCAACAGCAAG
CAATTGGAGCAATATATCTACTCGGTGATCAAGAGCTACGTGCACTTGGA
AAGTACAGCGAAAAACTCTGGCATCAAGGAGTGGCACGATCTTGGCTTTA
ACACCACGGAAAGGTCCGCCGCCACATTTGCCAAGGGCCTTATGAGAAAT
CTGGGCAAGGAGCTAGAGCACACTATGCCCAACGATGCCCTGGAACGTTG
GTTACACGTCACTCCGCAGTTTTTGCAGATTTGGCGCGAGGTCTTTAGCC
AGCTGTATTGTCGCCATGGTGGCAGCAAACGCAACATAATCAAGGAATGG
AAATTCCAATTCTGCCAGCACTGTGTGATGCTCCGCAAAATAGTCATTAT
CGCCCTATCATCGAACTACCTCACGTCCTGTATATCAATGCTCAGCTGCC
CCGCGAACATCGGCACAAATGGCGCTTTCTATTCTCATCGAAAATCAACG
GGGAAAGCTTCTCGACGATGTTGGGAAAAGTGCTGGACAAAGGACCAACG
CTGTTCTTTATTGAGGACGAGGATCAATATATATTGGGCGGCTACGCGTC
CGAAACGTGGTCCGTGAAACCGCAATTTGGAGCGATGACAGCTCATTGCT
CTACACCTAAGCCCTGCCATGCGTGCTTTCGCCACAACTATAACATCACT
ATCAGTATTTGAAATGATCAGCAAACTATGCCGAATGCCTGGGCATGGCG
TCAGTGATTTTGGGCCTTTGGAATGACTGCATCGGCATGACAAAGCGTGA
AGTGCACTACATATTCGAGACTACGTGCAGTGAAATAACGAACGTTCAAT
CGAACTGGATGGCCCTAGGGACTCAACGATAGGAACGACGGTTAGGGACG
AACGGTCATCAACACGCTC

FMO01567.5prime Blast Records

Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:45:38
Subject Length Description Subject Range Query Range Score Percent Strand
CG5149-RA 1898 CG5149-RA 151..1297 9..1131 5070 97.4 Plus
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 22:45:36
Subject Length Description Subject Range Query Range Score Percent Strand
2L 23513712 2L 7385867..7386182 677..363 1530 99.7 Minus
2L 23513712 2L 7385436..7385805 1037..677 1395 96.2 Minus
2L 23513712 2L 7386424..7386649 362..137 1130 100 Minus
2L 23513712 2L 7387974..7388103 138..9 650 100 Minus
Blast to na_te.dros performed on 2014-11-28 22:45:37 has no hits.

FMO01567.5prime Sim4 Records

Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:18 Download gff for FMO01567.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-RB 140..1292 1..1131 97   Plus
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:50:52 Download gff for FMO01567.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 145..1304 1..1138 96   Plus
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 23:18:12 Download gff for FMO01567.5prime
Subject Subject Range Query Range Percent Splice Strand
CG5149-RA 145..1304 1..1138 96   Plus
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 23:18:12 Download gff for FMO01567.5prime
Subject Subject Range Query Range Percent Splice Strand
2L 7385431..7385804 678..1041 96 <- Minus
2L 7385867..7386182 363..677 99 <- Minus
2L 7386424..7386648 138..362 100 <- Minus
2L 7387975..7388108 1..137 97   Minus
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:50:52 Download gff for FMO01567.5prime
Subject Subject Range Query Range Percent Splice Strand
arm_2L 7385431..7385804 678..1041 96 <- Minus
arm_2L 7385867..7386182 363..677 99 <- Minus
arm_2L 7386424..7386648 138..362 100 <- Minus
arm_2L 7387975..7388108 1..137 97   Minus