FMO01569.5prime Sequence
1194 bp (1016 high quality bases) assembled on 2008-03-21
> FMO01569.5prime
CAGTCGACATGATGTGCAGTAACAATATATCTGACTACAAACTGCTAGAA
ATACTTAAAAATGGCATGATTGGAACGGTTTACAAAGCAGAAGATATAAA
CAACAAATGCTTGGCTGTTAAAAAAGTTTCTATGGATCAGCCAATGGAAA
AGCTTACACTATTGTTTAACGAAGTTTTAACTGTTCGTCGGCTTCAACAT
AGAAATATAAACACTATCGTCAGTTGTTTTTTGTACAAGCAGTATGTTTA
TTTGACTTACAAGTTTATGTGTTTTGGAAATTGTGAAGTGCTGCTAAAAA
ACGTGTATACTTCTGGGTTTCCGGAAGTTGCAATAGCACTCATTTTAAAG
GATGTATTATCAGCACTTACTTATATTCACTCCGAGCATTATGTTCATGG
ATCAGTAAGGGCTAAGCACATACTCTTAAGTCCCAGAAAAGCAGTTCTAT
CAAATTTTAGTTACTGTCAAAGTTTTATTAGTCAAGGAGAAAAAAAAACG
TTTATATTTGGATCAACGGTTGGAATAGAAAAAGAGTTGTATTGGACAGC
ACCAGAAGTTTTATATCAAAACCTTTCTGGTTACACTGAAAAAATAGATA
TTTATTCCATCGGAATTACTTGTTGCGAAATGGCAAACGGGTTTCAACCC
TTTAAAGACACAGAATTAACATACATGTATATTGAAAAAGTGCGTGGAAG
TCTGCAGGTGCTACTGGATAAAACAGCCTTTTGGAAAATCAAGGTTCCCT
ATCCCTGGAGCACACAAATAAACGAATTGCTCGTGATGTAATTGTAAACA
AATCATTTTCGGAAAACTTCCATCAATTTGTTGAACTATGCTTGATAAAA
ATCCATTGTCTCGATGGGCAGCATCAAAATTAATGACACACTCGTTTCTT
AAGCAATGTCGGAATACCAGTCTTTTGGACCAGTGAAAGACTTAGCCAAA
AATGTCAAAGTCAAAGAAATGACATGAAATATTCTCTGATGCTCGGGCAG
CCACACCTCACAAATGAAAAATATGAAATTGCAGCTTTCTAGACATCGTG
GCGCGCGGGTCAGGTATTGTCATATCTATCATATCTAATCTATTACAACT
AGCCTAGGAATCTGCCATGACATAGCTTGAATCCAATAAGCTCGGGCTAC
CGAGCTCGACAATTCAGTGGATTCTGGGAGCTATATACCTGGAT
FMO01569.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:07:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Stlk-RC | 1584 | CG40293-RC | 58..1094 | 9..1030 | 4800 | 98.4 | Plus |
| Stlk-RA | 1878 | CG40293-RA | 58..1094 | 9..1030 | 4800 | 98.4 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 19:07:26
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 2R | 25286936 | 2R | 4560356..4560791 | 311..745 | 2115 | 99.5 | Plus |
| 2R | 25286936 | 2R | 4546748..4547055 | 9..316 | 1540 | 100 | Plus |
| 2R | 25286936 | 2R | 4562843..4563066 | 742..961 | 925 | 97.3 | Plus |
Blast to na_te.dros performed on 2014-11-28 19:07:26 has no hits.
FMO01569.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed on 2010-07-30 09:25:39 has no hits.
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-04 22:22:59 Download gff for
FMO01569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stlk-RA | 58..1079 | 9..1017 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 19:40:24 Download gff for
FMO01569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Stlk-RA | 58..1079 | 9..1017 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 19:40:24 Download gff for
FMO01569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 2R | 4546748..4547054 | 9..315 | 100 | -> | Plus |
| 2R | 4560361..4560789 | 316..743 | 99 | -> | Plus |
| 2R | 4562845..4563081 | 744..973 | 96 | -> | Plus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-04 22:22:59 Download gff for
FMO01569.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_2R | 434253..434559 | 9..315 | 100 | -> | Plus |
| arm_2R | 447866..448294 | 316..743 | 99 | -> | Plus |
| arm_2R | 450350..450586 | 744..973 | 96 | -> | Plus |
