FMO01570.5prime Sequence
1229 bp (1056 high quality bases) assembled on 2008-03-21
> FMO01570.5prime
CAGTCGACATGGAGTCTGTGGCCCAGCAACTTAGAGAGCTGTCGCTTCCA
AAAGGTGACACAGGCTCACCGCTTGTATGTATTGGACATGGAAAAGTTGC
GAAGCTAGTCGCCAAGATAAGTAATAATCAAAATGCATCAGTAAAGAGGA
GATTGGATATACCTCCTAAGCCGCCGATAAAATATAATGAAATGCCTCAG
GTTCCATCAAGCAGACAGGTTTTGTGTTCGCGGGAACCACTATATTCACA
ACCTCTGATTGGAGTCGAGAAAACAATGAGGGGGCATATGCCTTTTAGAA
AATACCTCAGCTCTGAATTCGGAGTTGCTGATACTCAAATAAACAGAAAA
ACAACTTTAGATAATCCGGCAATTTTGGAACAGCAATTAGAAGCTCTTGC
TTACCATAAACTTCAAATGGAAAAAAAGGGTCTTTTGGGAGTACAAGCTA
AGCCAACACAACCTCTCAACAGCTTTACAAAGCCCCTTTCAAAGACTTTA
AGCAAAAGCTTAATATATTCTAATTTAGGTTCTGTTCGCAAAGAAATAGA
AACATTAGAACTATTAACAGACGAAACTAAGATTTCTGCGAGTACATATT
CAAACGTTAATGAAACTGACAACGAAAAAGATGAGTTACCGCCACCACCT
AGTCCAGAGAGCGCTGTGAGTTCTTCATACAGTGAGCTTCGTCACGCCAC
TTTGGAATTCAACAAACCAATTGATTATTTACAAAATAACCAGACAACGA
ATCCTTTACAAATATATGCAAACCAATATGCGATGCAGCATGATGCCACA
GGCAAGAGCTCTTCTACATATGATTCAATATATGAACCTATAAACCCTCG
ACCCTGTGTTGCAGATACGCTGCCTCGTGAAAGTTATAATCTGCATAATT
CATACGTTAATGATAATAATCCAAACATTTCCCATGATACATATTTCGAA
TTCGATTGAGCTAACCAACACTATACATACATGGTAATGCTAGAACTACA
TTTTTATGACGTGAACAGCATCCATAGAAATGATAGGAGGTCTAAAAATT
ACATTTCAATACCCACCGACGGGTTCAGAATTGGAAACTACGGTAGGGTG
TGTCAATGCATTCACGTGTCCTGGAAAGTATGGGAGTGTACGACAATGGT
AATCAAATACCAAATTTTGCTCAGCTACGATTGCAATATACTTACAGGGG
AACCTTCTTAGTGCATTGTAACAGCGGCA
FMO01570.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:30
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| Zyx-RA | 1979 | CG32018-RA | 209..1369 | 9..1159 | 5260 | 97.8 | Plus |
| Zyx-RL | 2180 | CG32018-RL | 347..956 | 9..618 | 3050 | 100 | Plus |
| Zyx-RB | 2061 | CG32018-RB | 228..837 | 9..618 | 3050 | 100 | Plus |
| Zyx-RL | 2180 | CG32018-RL | 1019..1570 | 618..1159 | 2215 | 95.3 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:27
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| 4 | 1348131 | 4 | 1059419..1059840 | 618..197 | 2110 | 100 | Minus |
| 4 | 1348131 | 4 | 1058236..1058506 | 1069..805 | 980 | 96.7 | Minus |
| 4 | 1348131 | 4 | 1060411..1060604 | 202..9 | 970 | 100 | Minus |
| 4 | 1348131 | 4 | 1059101..1059289 | 806..618 | 945 | 100 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:54:28 has no hits.
FMO01570.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:08 Download gff for
FMO01570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG32018-RA | 204..1341 | 4..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:13 Download gff for
FMO01570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zyx-RA | 206..1343 | 4..1130 | 98 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:41 Download gff for
FMO01570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| Zyx-RA | 206..1343 | 4..1130 | 98 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:41 Download gff for
FMO01570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| 4 | 1058236..1058504 | 807..1069 | 97 | <- | Minus |
| 4 | 1059101..1059288 | 619..806 | 100 | <- | Minus |
| 4 | 1059419..1059836 | 201..618 | 100 | <- | Minus |
| 4 | 1060413..1060607 | 4..200 | 98 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:13 Download gff for
FMO01570.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_4 | 1078862..1079130 | 807..1069 | 97 | <- | Minus |
| arm_4 | 1079727..1079914 | 619..806 | 100 | <- | Minus |
| arm_4 | 1080045..1080462 | 201..618 | 100 | <- | Minus |
| arm_4 | 1081039..1081233 | 4..200 | 98 | | Minus |
