FMO01571.5prime Sequence
1206 bp (1026 high quality bases) assembled on 2008-03-21
> FMO01571.5prime
CAGTCGACATGCAGAGACTGCAATTCGCTCTGCTAGCGTCGCTGCTCCTG
CTGGTGCTGCTTCTTCCGGGGATTAGGAGCACTCCCATCGACCAGGACGT
CGACATTGTTCACTATCAGCCGGAGCAAGTGCATCTGTCCTTTGGAGACA
ATCTTCGTGATATTGTGGTGACATGGTCGACTCGAAGTTCCCCCAACGCC
TCGGTGGTTAAATTCTCGCGGAACTATCTAAAAGACGAGCCGATAATGGT
GAACGGCACCTGGCAGCGATTCGTCGATGGTGGAAAGAAGGCTCGCACTC
AGTACATACACAATGTGGAACTGAAGGATCTGGAGCCGGACACGCGGTAC
GAGTACAGCTGCGGCAGTCCGCTCGGTTGGTCGGCGGTGTTCAATTTCAA
GACGCCACCGGCGGGTGAGAAGTGGTCGCCCTCGTTGGCCATTTTCGGTG
ACATGGGCAACGAGAATGCCCAGTCGATGGGCCGACTACAGCAGGACACT
GAGCGAGGCATGTACGATGCCATCATCCATGTGGGTGACTTTGCCTACGA
CATGGACACCTCCAACGCTGCCGTGGGTGATGCATTCATGCGCCAGATCG
AGTCGGTGGCTGCCTATGTGCCCTACATGGTTTGTCCGGGCAATCACGAG
GAGAAGTACAACTTCTCCAACTATCGCGCCCGCTTCAATATGCCCGGCGA
AACGGACAGCTTGTGGTACAGCTTCAACTTGGGACCCGTGCACTTTGTCT
CCTTCTCCACGGAGGTCTACTACTTCCTCAGCTATGGCTTCAAGTTGCTG
ACCAAGCAATTCGAGTGGCTGGAACGTGACCTGGCCGAGGCCAATCTGCC
CGAGAATCGGGCCAAACGTCCGTGGATCATCACCTACGGTCATCGACCGA
TGTACTGCAGCGACGACAGGAGTACGATTGCATAGCCACTGGAGACGTAC
ATTCGCAGGGTCTGCCCATGCTCAGTGGTTCGGCTGAGGATCTGTTCTAC
AGCACGGCGTCGACGTGGAGATCTTTGCCGCATGACACTTCTAACCTCGC
TGTGGCCATCCTACGAACTACAAGGTGTACATGGGCAGTGCGGAGGGCGC
CATACCTAATCCAAGGCCCTCCATTCGGATCTTCACGTTCGCCGCGTGCA
GGAGATCGCGGACCTCTCCTCACGAATTGCTGCCACTTCGGGAAGAGATC
CTCTCC
FMO01571.5prime Blast Records
Blast to dmel-all-transcript-r6.02.fasta performed 2014-11-28 21:54:40
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| CG1637-RC | 1708 | CG1637-RC | 246..1382 | 9..1137 | 5140 | 97.6 | Plus |
| CG1637-RD | 2199 | CG1637-RD | 693..1186 | 423..916 | 1015 | 80.6 | Plus |
| CG1637-RB | 2196 | CG1637-RB | 690..1183 | 423..916 | 1015 | 80.6 | Plus |
| CG1637-RD | 2199 | CG1637-RD | 246..384 | 9..147 | 695 | 100 | Plus |
Blast to na_all.dmel.RELEASE6 performed 2014-11-28 21:54:38
| Subject | Length | Description | Subject Range | Query Range | Score | Percent | Strand |
|---|
| X | 23542271 | X | 10871529..10872045 | 658..142 | 2570 | 99.8 | Minus |
| X | 23542271 | X | 10871020..10871465 | 1096..659 | 1560 | 94.6 | Minus |
| X | 23542271 | X | 10877415..10877553 | 147..9 | 695 | 100 | Minus |
| X | 23542271 | X | 10875242..10875476 | 657..423 | 560 | 82.6 | Minus |
| X | 23542271 | X | 10874913..10875170 | 916..659 | 465 | 78.7 | Minus |
Blast to na_te.dros performed on 2014-11-28 21:54:39 has no hits.
FMO01571.5prime Sim4 Records
Sim4 to dmel-all-transcript-r5.5.fasta performed 2008-05-23 17:54:10 Download gff for
FMO01571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 247..1378 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r5.52.fasta performed 2013-08-05 00:49:19 Download gff for
FMO01571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 238..1369 | 1..1124 | 97 | | Plus |
Sim4 to dmel-all-transcript-r6.02.fasta performed 2014-11-28 22:36:45 Download gff for
FMO01571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| CG1637-RC | 238..1369 | 1..1124 | 97 | | Plus |
Sim4 to na_all.dmel.RELEASE6 performed 2014-11-28 22:36:45 Download gff for
FMO01571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| X | 10870992..10871465 | 659..1124 | 94 | <- | Minus |
| X | 10871529..10872039 | 148..658 | 100 | <- | Minus |
| X | 10877415..10877561 | 1..147 | 97 | | Minus |
Sim4 to na_arms.dmel.RELEASE5 performed 2013-08-05 00:49:19 Download gff for
FMO01571.5prime
| Subject | Subject Range | Query Range | Percent | Splice | Strand |
|---|
| arm_X | 10771448..10771594 | 1..147 | 97 | | Minus |
| arm_X | 10765562..10766072 | 148..658 | 100 | <- | Minus |
| arm_X | 10765025..10765498 | 659..1124 | 94 | <- | Minus |
